Strain Fitness in Shewanella oneidensis MR-1 around SO0034

Experiment: Paraquat dichloride 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0033 and SO0034 are separated by 83 nucleotidesSO0034 and smg are separated by 2 nucleotidessmg and SO0036 are separated by 112 nucleotides SO0033: SO0033 - LysM domain protein (NCBI ptt file), at 38,024 to 39,160 SO0033 SO0034: SO0034 - DNA processing protein DprA, putative (NCBI ptt file), at 39,244 to 40,260 SO0034 SO0035: smg - smg protein (NCBI ptt file), at 40,263 to 40,739 smg SO0036: SO0036 - topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file), at 40,852 to 41,418 SO0036 Position (kb) 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 38.260 kb on + strand, within SO0033at 38.265 kb on + strand, within SO0033at 38.273 kb on - strand, within SO0033at 38.273 kb on - strand, within SO0033at 38.273 kb on - strand, within SO0033at 38.287 kb on + strand, within SO0033at 38.287 kb on + strand, within SO0033at 38.287 kb on + strand, within SO0033at 38.295 kb on - strand, within SO0033at 38.295 kb on - strand, within SO0033at 38.295 kb on - strand, within SO0033at 38.330 kb on + strand, within SO0033at 38.434 kb on - strand, within SO0033at 38.454 kb on + strand, within SO0033at 38.454 kb on + strand, within SO0033at 38.476 kb on - strand, within SO0033at 38.476 kb on - strand, within SO0033at 38.483 kb on + strand, within SO0033at 38.485 kb on + strand, within SO0033at 38.543 kb on + strand, within SO0033at 38.577 kb on + strand, within SO0033at 38.585 kb on - strand, within SO0033at 38.603 kb on + strand, within SO0033at 38.712 kb on + strand, within SO0033at 38.779 kb on + strand, within SO0033at 38.779 kb on + strand, within SO0033at 38.779 kb on + strand, within SO0033at 38.787 kb on - strand, within SO0033at 38.787 kb on - strand, within SO0033at 38.787 kb on - strand, within SO0033at 38.787 kb on - strand, within SO0033at 38.831 kb on + strand, within SO0033at 38.836 kb on + strand, within SO0033at 38.859 kb on + strand, within SO0033at 38.862 kb on - strand, within SO0033at 38.877 kb on - strand, within SO0033at 38.882 kb on - strand, within SO0033at 38.977 kb on - strand, within SO0033at 38.992 kb on + strand, within SO0033at 39.153 kb on - strandat 39.207 kb on + strandat 39.257 kb on + strandat 39.265 kb on - strandat 39.362 kb on + strand, within SO0034at 39.408 kb on + strand, within SO0034at 39.408 kb on + strand, within SO0034at 39.416 kb on - strand, within SO0034at 39.416 kb on - strand, within SO0034at 39.416 kb on - strand, within SO0034at 39.421 kb on - strand, within SO0034at 39.470 kb on + strand, within SO0034at 39.615 kb on - strand, within SO0034at 39.616 kb on - strand, within SO0034at 39.625 kb on + strand, within SO0034at 39.625 kb on - strand, within SO0034at 39.625 kb on - strand, within SO0034at 39.633 kb on - strand, within SO0034at 39.633 kb on - strand, within SO0034at 39.633 kb on - strand, within SO0034at 39.649 kb on + strand, within SO0034at 39.661 kb on + strand, within SO0034at 39.737 kb on + strand, within SO0034at 39.763 kb on + strand, within SO0034at 39.880 kb on - strand, within SO0034at 40.061 kb on + strand, within SO0034at 40.227 kb on + strandat 40.234 kb on + strandat 40.234 kb on + strandat 40.239 kb on + strandat 40.239 kb on + strandat 40.246 kb on + strandat 40.247 kb on - strandat 40.252 kb on - strandat 40.335 kb on + strand, within smgat 40.344 kb on - strand, within smgat 40.350 kb on - strand, within smgat 40.362 kb on + strand, within smgat 40.430 kb on + strand, within smgat 40.430 kb on + strand, within smgat 40.435 kb on + strand, within smgat 40.435 kb on + strand, within smgat 40.435 kb on + strand, within smgat 40.435 kb on + strand, within smgat 40.435 kb on + strand, within smgat 40.436 kb on + strand, within smgat 40.436 kb on + strand, within smgat 40.436 kb on + strand, within smgat 40.438 kb on - strand, within smgat 40.443 kb on - strand, within smgat 40.443 kb on - strand, within smgat 40.443 kb on - strand, within smgat 40.443 kb on - strand, within smgat 40.443 kb on - strand, within smgat 40.443 kb on - strand, within smgat 40.443 kb on - strand, within smgat 40.443 kb on - strand, within smgat 40.443 kb on - strand, within smgat 40.445 kb on + strand, within smgat 40.511 kb on - strand, within smgat 40.564 kb on + strand, within smgat 40.660 kb on - strand, within smgat 40.727 kb on + strandat 40.735 kb on - strandat 40.750 kb on - strandat 40.878 kb on + strandat 40.978 kb on - strand, within SO0036at 41.015 kb on - strand, within SO0036at 41.023 kb on - strand, within SO0036at 41.025 kb on + strand, within SO0036at 41.057 kb on + strand, within SO0036at 41.149 kb on - strand, within SO0036at 41.180 kb on + strand, within SO0036at 41.188 kb on - strand, within SO0036at 41.216 kb on + strand, within SO0036at 41.216 kb on + strand, within SO0036

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.5 mg/ml
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38,260 + SO0033 0.21 -0.3
38,265 + SO0033 0.21 -0.1
38,273 - SO0033 0.22 +0.1
38,273 - SO0033 0.22 -0.1
38,273 - SO0033 0.22 +0.5
38,287 + SO0033 0.23 -2.4
38,287 + SO0033 0.23 -0.6
38,287 + SO0033 0.23 -0.6
38,295 - SO0033 0.24 -0.3
38,295 - SO0033 0.24 -0.6
38,295 - SO0033 0.24 -0.9
38,330 + SO0033 0.27 +0.5
38,434 - SO0033 0.36 +0.7
38,454 + SO0033 0.38 -0.0
38,454 + SO0033 0.38 -0.2
38,476 - SO0033 0.40 -0.7
38,476 - SO0033 0.40 -0.6
38,483 + SO0033 0.40 +1.0
38,485 + SO0033 0.41 +0.0
38,543 + SO0033 0.46 +0.6
38,577 + SO0033 0.49 -1.5
38,585 - SO0033 0.49 +0.3
38,603 + SO0033 0.51 -0.3
38,712 + SO0033 0.61 -0.7
38,779 + SO0033 0.66 -0.2
38,779 + SO0033 0.66 +0.8
38,779 + SO0033 0.66 -1.7
38,787 - SO0033 0.67 -0.8
38,787 - SO0033 0.67 -0.8
38,787 - SO0033 0.67 +1.0
38,787 - SO0033 0.67 +1.0
38,831 + SO0033 0.71 +1.6
38,836 + SO0033 0.71 -0.0
38,859 + SO0033 0.73 +0.6
38,862 - SO0033 0.74 -2.5
38,877 - SO0033 0.75 +0.2
38,882 - SO0033 0.75 +0.2
38,977 - SO0033 0.84 +0.1
38,992 + SO0033 0.85 +0.5
39,153 - -0.0
39,207 + +0.5
39,257 + -1.5
39,265 - +0.5
39,362 + SO0034 0.12 -0.4
39,408 + SO0034 0.16 -0.1
39,408 + SO0034 0.16 +1.0
39,416 - SO0034 0.17 +0.6
39,416 - SO0034 0.17 +1.3
39,416 - SO0034 0.17 +0.0
39,421 - SO0034 0.17 +0.1
39,470 + SO0034 0.22 +0.4
39,615 - SO0034 0.36 +0.6
39,616 - SO0034 0.37 -0.5
39,625 + SO0034 0.37 +2.3
39,625 - SO0034 0.37 +0.6
39,625 - SO0034 0.37 +1.2
39,633 - SO0034 0.38 -0.2
39,633 - SO0034 0.38 -0.3
39,633 - SO0034 0.38 -2.4
39,649 + SO0034 0.40 +0.3
39,661 + SO0034 0.41 +0.1
39,737 + SO0034 0.48 +1.0
39,763 + SO0034 0.51 -1.2
39,880 - SO0034 0.63 -0.1
40,061 + SO0034 0.80 +0.2
40,227 + -0.0
40,234 + +0.4
40,234 + +0.9
40,239 + +0.0
40,239 + -0.5
40,246 + -2.0
40,247 - -0.9
40,252 - -0.0
40,335 + smg SO0035 0.15 -0.6
40,344 - smg SO0035 0.17 -1.1
40,350 - smg SO0035 0.18 -1.8
40,362 + smg SO0035 0.21 -1.1
40,430 + smg SO0035 0.35 -0.2
40,430 + smg SO0035 0.35 -1.2
40,435 + smg SO0035 0.36 -1.4
40,435 + smg SO0035 0.36 -0.3
40,435 + smg SO0035 0.36 -1.4
40,435 + smg SO0035 0.36 -1.2
40,435 + smg SO0035 0.36 -1.2
40,436 + smg SO0035 0.36 -1.2
40,436 + smg SO0035 0.36 +0.2
40,436 + smg SO0035 0.36 -0.5
40,438 - smg SO0035 0.37 -0.9
40,443 - smg SO0035 0.38 -0.7
40,443 - smg SO0035 0.38 +1.3
40,443 - smg SO0035 0.38 -1.1
40,443 - smg SO0035 0.38 +0.1
40,443 - smg SO0035 0.38 -0.6
40,443 - smg SO0035 0.38 -1.5
40,443 - smg SO0035 0.38 -3.2
40,443 - smg SO0035 0.38 -0.4
40,443 - smg SO0035 0.38 -2.7
40,445 + smg SO0035 0.38 -0.9
40,511 - smg SO0035 0.52 -0.0
40,564 + smg SO0035 0.63 -0.5
40,660 - smg SO0035 0.83 -0.3
40,727 + -0.6
40,735 - -0.4
40,750 - +0.3
40,878 + +0.5
40,978 - SO0036 0.22 -0.6
41,015 - SO0036 0.29 -0.5
41,023 - SO0036 0.30 -1.3
41,025 + SO0036 0.31 -0.7
41,057 + SO0036 0.36 -0.9
41,149 - SO0036 0.52 -0.6
41,180 + SO0036 0.58 -1.5
41,188 - SO0036 0.59 -0.1
41,216 + SO0036 0.64 -2.0
41,216 + SO0036 0.64 -0.5

Or see this region's nucleotide sequence