Strain Fitness in Marinobacter adhaerens HP15 around HP15_3884

Experiment: pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3882 and HP15_3883 are separated by 108 nucleotidesHP15_3883 and HP15_3884 are separated by 202 nucleotidesHP15_3884 and HP15_3885 are separated by 134 nucleotides HP15_3882: HP15_3882 - conserved hypothetical protein, at 4,112,080 to 4,112,778 _3882 HP15_3883: HP15_3883 - Hcp protein, at 4,112,887 to 4,113,417 _3883 HP15_3884: HP15_3884 - protein containing serine/threonine protein kinase-related domain, at 4,113,620 to 4,115,287 _3884 HP15_3885: HP15_3885 - formate and nitrite transporter, at 4,115,422 to 4,116,270 _3885 Position (kb) 4113 4114 4115 4116Strain fitness (log2 ratio) -1 0 1 2at 4112.708 kb on - strand, within HP15_3882at 4112.748 kb on - strandat 4112.780 kb on - strandat 4112.787 kb on + strandat 4112.796 kb on + strandat 4112.880 kb on + strandat 4112.911 kb on + strandat 4112.978 kb on - strand, within HP15_3883at 4112.986 kb on - strand, within HP15_3883at 4113.176 kb on + strand, within HP15_3883at 4113.184 kb on - strand, within HP15_3883at 4113.191 kb on + strand, within HP15_3883at 4113.366 kb on + strandat 4113.409 kb on - strandat 4113.629 kb on + strandat 4113.670 kb on + strandat 4113.691 kb on - strandat 4113.744 kb on + strandat 4113.753 kb on + strandat 4113.913 kb on + strand, within HP15_3884at 4113.913 kb on + strand, within HP15_3884at 4113.921 kb on - strand, within HP15_3884at 4114.111 kb on + strand, within HP15_3884at 4114.136 kb on - strand, within HP15_3884at 4114.332 kb on + strand, within HP15_3884at 4114.431 kb on - strand, within HP15_3884at 4114.503 kb on + strand, within HP15_3884at 4114.659 kb on + strand, within HP15_3884at 4114.677 kb on - strand, within HP15_3884at 4114.713 kb on - strand, within HP15_3884at 4114.762 kb on - strand, within HP15_3884at 4114.794 kb on - strand, within HP15_3884at 4114.802 kb on - strand, within HP15_3884at 4114.860 kb on - strand, within HP15_3884at 4114.871 kb on + strand, within HP15_3884at 4114.879 kb on - strand, within HP15_3884at 4114.905 kb on + strand, within HP15_3884at 4114.905 kb on + strand, within HP15_3884at 4114.907 kb on + strand, within HP15_3884at 4114.913 kb on - strand, within HP15_3884at 4114.913 kb on - strand, within HP15_3884at 4114.924 kb on + strand, within HP15_3884at 4114.924 kb on + strand, within HP15_3884at 4114.924 kb on + strand, within HP15_3884at 4114.924 kb on + strand, within HP15_3884at 4114.932 kb on - strand, within HP15_3884at 4114.932 kb on - strand, within HP15_3884at 4114.946 kb on - strand, within HP15_3884at 4114.946 kb on - strand, within HP15_3884at 4114.964 kb on + strand, within HP15_3884at 4115.039 kb on + strand, within HP15_3884at 4115.047 kb on - strand, within HP15_3884at 4115.054 kb on + strand, within HP15_3884at 4115.092 kb on - strand, within HP15_3884at 4115.138 kb on - strandat 4115.258 kb on + strandat 4115.268 kb on - strandat 4115.341 kb on - strandat 4115.434 kb on + strandat 4115.442 kb on - strandat 4115.442 kb on - strandat 4115.442 kb on - strandat 4115.457 kb on - strandat 4115.483 kb on + strandat 4115.491 kb on - strandat 4115.491 kb on - strandat 4115.503 kb on - strandat 4115.550 kb on - strand, within HP15_3885at 4115.555 kb on - strand, within HP15_3885at 4115.646 kb on + strand, within HP15_3885at 4116.002 kb on + strand, within HP15_3885at 4116.087 kb on + strand, within HP15_3885at 4116.087 kb on + strandat 4116.112 kb on + strand, within HP15_3885at 4116.112 kb on + strand, within HP15_3885at 4116.160 kb on + strand, within HP15_3885at 4116.164 kb on - strand, within HP15_3885at 4116.176 kb on + strand, within HP15_3885at 4116.181 kb on + strand, within HP15_3885at 4116.268 kb on - strandat 4116.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate
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4,112,708 - HP15_3882 0.90 +0.1
4,112,748 - +0.3
4,112,780 - +0.6
4,112,787 + +0.0
4,112,796 + +0.2
4,112,880 + -0.1
4,112,911 + +0.1
4,112,978 - HP15_3883 0.17 +0.2
4,112,986 - HP15_3883 0.19 -0.1
4,113,176 + HP15_3883 0.54 -1.2
4,113,184 - HP15_3883 0.56 +0.5
4,113,191 + HP15_3883 0.57 -0.1
4,113,366 + +0.3
4,113,409 - -0.5
4,113,629 + +0.5
4,113,670 + -0.0
4,113,691 - +0.0
4,113,744 + -0.0
4,113,753 + +0.2
4,113,913 + HP15_3884 0.18 +0.6
4,113,913 + HP15_3884 0.18 +0.2
4,113,921 - HP15_3884 0.18 +0.2
4,114,111 + HP15_3884 0.29 +0.6
4,114,136 - HP15_3884 0.31 -0.2
4,114,332 + HP15_3884 0.43 +0.6
4,114,431 - HP15_3884 0.49 +0.3
4,114,503 + HP15_3884 0.53 +0.5
4,114,659 + HP15_3884 0.62 +0.2
4,114,677 - HP15_3884 0.63 -0.4
4,114,713 - HP15_3884 0.66 +0.2
4,114,762 - HP15_3884 0.68 +0.1
4,114,794 - HP15_3884 0.70 +1.6
4,114,802 - HP15_3884 0.71 +0.4
4,114,860 - HP15_3884 0.74 +0.1
4,114,871 + HP15_3884 0.75 +0.2
4,114,879 - HP15_3884 0.75 +0.6
4,114,905 + HP15_3884 0.77 +0.0
4,114,905 + HP15_3884 0.77 +0.1
4,114,907 + HP15_3884 0.77 +0.1
4,114,913 - HP15_3884 0.78 -0.6
4,114,913 - HP15_3884 0.78 -0.1
4,114,924 + HP15_3884 0.78 -0.1
4,114,924 + HP15_3884 0.78 -0.1
4,114,924 + HP15_3884 0.78 -0.4
4,114,924 + HP15_3884 0.78 +0.8
4,114,932 - HP15_3884 0.79 +0.0
4,114,932 - HP15_3884 0.79 -0.2
4,114,946 - HP15_3884 0.79 +0.1
4,114,946 - HP15_3884 0.79 -0.1
4,114,964 + HP15_3884 0.81 -0.2
4,115,039 + HP15_3884 0.85 +0.5
4,115,047 - HP15_3884 0.86 -0.3
4,115,054 + HP15_3884 0.86 +0.9
4,115,092 - HP15_3884 0.88 +0.5
4,115,138 - +0.1
4,115,258 + +0.4
4,115,268 - +0.2
4,115,341 - -0.2
4,115,434 + +0.6
4,115,442 - -0.1
4,115,442 - +0.2
4,115,442 - +0.3
4,115,457 - +0.3
4,115,483 + +0.2
4,115,491 - -0.8
4,115,491 - +0.3
4,115,503 - -0.3
4,115,550 - HP15_3885 0.15 +0.9
4,115,555 - HP15_3885 0.16 -0.4
4,115,646 + HP15_3885 0.26 +0.7
4,116,002 + HP15_3885 0.68 -0.4
4,116,087 + HP15_3885 0.78 -0.3
4,116,087 + +2.5
4,116,112 + HP15_3885 0.81 -0.2
4,116,112 + HP15_3885 0.81 -0.0
4,116,160 + HP15_3885 0.87 +2.3
4,116,164 - HP15_3885 0.87 +0.7
4,116,176 + HP15_3885 0.89 -0.1
4,116,181 + HP15_3885 0.89 +0.4
4,116,268 - +0.3
4,116,268 - -0.5

Or see this region's nucleotide sequence