Strain Fitness in Dechlorosoma suillum PS around Dsui_3473

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3471 and Dsui_3472 are separated by 10 nucleotidesDsui_3472 and Dsui_3473 are separated by 10 nucleotidesDsui_3473 and Dsui_3474 overlap by 4 nucleotides Dsui_3471: Dsui_3471 - methyl-accepting chemotaxis protein, at 3,734,006 to 3,735,151 _3471 Dsui_3472: Dsui_3472 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,735,162 to 3,735,530 _3472 Dsui_3473: Dsui_3473 - putative NTP binding protein (contains STAS domain), at 3,735,541 to 3,735,855 _3473 Dsui_3474: Dsui_3474 - chemotaxis protein histidine kinase-like protein, at 3,735,852 to 3,738,071 _3474 Position (kb) 3735 3736Strain fitness (log2 ratio) -1 0 1 2 3at 3734.703 kb on - strandat 3734.724 kb on + strand, within Dsui_3471at 3734.793 kb on + strandat 3734.807 kb on - strandat 3734.840 kb on + strand, within Dsui_3471at 3735.265 kb on + strandat 3735.274 kb on + strandat 3735.341 kb on - strandat 3735.497 kb on - strandat 3735.532 kb on - strandat 3735.532 kb on - strandat 3735.546 kb on + strandat 3735.578 kb on + strand, within Dsui_3473at 3735.676 kb on - strand, within Dsui_3473at 3735.774 kb on - strandat 3735.836 kb on + strandat 3735.900 kb on - strandat 3736.447 kb on + strand, within Dsui_3474at 3736.529 kb on - strand, within Dsui_3474at 3736.591 kb on + strand, within Dsui_3474at 3736.607 kb on + strand, within Dsui_3474at 3736.636 kb on - strand, within Dsui_3474

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,734,703 - +0.2
3,734,724 + Dsui_3471 0.63 -0.7
3,734,793 + +3.0
3,734,807 - +2.0
3,734,840 + Dsui_3471 0.73 +0.1
3,735,265 + +1.0
3,735,274 + +2.0
3,735,341 - -0.0
3,735,497 - -0.3
3,735,532 - +0.8
3,735,532 - +1.3
3,735,546 + +0.2
3,735,578 + Dsui_3473 0.12 -0.3
3,735,676 - Dsui_3473 0.43 +0.4
3,735,774 - +1.0
3,735,836 + +2.0
3,735,900 - -0.1
3,736,447 + Dsui_3474 0.27 -0.1
3,736,529 - Dsui_3474 0.30 -1.3
3,736,591 + Dsui_3474 0.33 +1.0
3,736,607 + Dsui_3474 0.34 -0.3
3,736,636 - Dsui_3474 0.35 +0.2

Or see this region's nucleotide sequence