Strain Fitness in Dechlorosoma suillum PS around Dsui_3433

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3432 and Dsui_3433 are separated by 124 nucleotidesDsui_3433 and Dsui_3434 are separated by 82 nucleotides Dsui_3432: Dsui_3432 - outer membrane protein, at 3,684,446 to 3,685,723 _3432 Dsui_3433: Dsui_3433 - putative acetyltransferase, at 3,685,848 to 3,686,354 _3433 Dsui_3434: Dsui_3434 - hypothetical protein, at 3,686,437 to 3,686,694 _3434 Position (kb) 3685 3686 3687Strain fitness (log2 ratio) -2 -1 0 1 2at 3684.955 kb on + strand, within Dsui_3432at 3685.030 kb on + strand, within Dsui_3432at 3685.038 kb on - strandat 3685.049 kb on - strandat 3685.194 kb on + strand, within Dsui_3432at 3685.212 kb on - strandat 3685.246 kb on + strand, within Dsui_3432at 3685.251 kb on + strand, within Dsui_3432at 3685.275 kb on + strand, within Dsui_3432at 3685.283 kb on - strandat 3685.283 kb on - strand, within Dsui_3432at 3685.396 kb on - strand, within Dsui_3432at 3685.435 kb on + strand, within Dsui_3432at 3685.680 kb on + strandat 3685.688 kb on - strandat 3685.763 kb on + strandat 3686.050 kb on - strand, within Dsui_3433at 3686.124 kb on - strand, within Dsui_3433at 3686.217 kb on - strandat 3686.226 kb on + strandat 3686.288 kb on - strandat 3686.294 kb on - strandat 3686.389 kb on - strandat 3686.404 kb on - strandat 3686.467 kb on + strand, within Dsui_3434at 3686.528 kb on + strand, within Dsui_3434at 3686.678 kb on + strandat 3686.698 kb on + strandat 3686.723 kb on + strandat 3686.763 kb on - strandat 3686.806 kb on + strandat 3686.853 kb on - strandat 3687.015 kb on - strandat 3687.059 kb on + strandat 3687.188 kb on - strandat 3687.190 kb on - strandat 3687.190 kb on - strandat 3687.198 kb on - strandat 3687.200 kb on - strandat 3687.210 kb on - strandat 3687.217 kb on + strandat 3687.227 kb on + strandat 3687.227 kb on + strandat 3687.241 kb on + strandat 3687.249 kb on - strandat 3687.249 kb on - strandat 3687.284 kb on - strandat 3687.288 kb on + strandat 3687.288 kb on + strandat 3687.288 kb on + strandat 3687.288 kb on + strandat 3687.291 kb on - strandat 3687.291 kb on - strandat 3687.296 kb on - strandat 3687.296 kb on - strandat 3687.296 kb on - strandat 3687.296 kb on - strandat 3687.296 kb on - strandat 3687.298 kb on + strandat 3687.298 kb on + strandat 3687.301 kb on - strandat 3687.303 kb on + strandat 3687.306 kb on - strandat 3687.306 kb on - strandat 3687.306 kb on - strandat 3687.306 kb on - strandat 3687.306 kb on - strandat 3687.306 kb on - strandat 3687.306 kb on - strandat 3687.334 kb on + strandat 3687.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,684,955 + Dsui_3432 0.40 -0.2
3,685,030 + Dsui_3432 0.46 +1.0
3,685,038 - -0.3
3,685,049 - +1.4
3,685,194 + Dsui_3432 0.59 +1.2
3,685,212 - +1.0
3,685,246 + Dsui_3432 0.63 -0.7
3,685,251 + Dsui_3432 0.63 -0.2
3,685,275 + Dsui_3432 0.65 -0.5
3,685,283 - +1.0
3,685,283 - Dsui_3432 0.65 +0.4
3,685,396 - Dsui_3432 0.74 -0.3
3,685,435 + Dsui_3432 0.77 +0.3
3,685,680 + +2.0
3,685,688 - -1.7
3,685,763 + +0.8
3,686,050 - Dsui_3433 0.40 +0.9
3,686,124 - Dsui_3433 0.54 -0.3
3,686,217 - +0.4
3,686,226 + +1.0
3,686,288 - +1.0
3,686,294 - +0.4
3,686,389 - +0.6
3,686,404 - +0.7
3,686,467 + Dsui_3434 0.12 +0.8
3,686,528 + Dsui_3434 0.35 -1.8
3,686,678 + -0.4
3,686,698 + +1.4
3,686,723 + -0.1
3,686,763 - +0.2
3,686,806 + +0.4
3,686,853 - -1.4
3,687,015 - +2.0
3,687,059 + -0.1
3,687,188 - +0.6
3,687,190 - -0.0
3,687,190 - +0.4
3,687,198 - +0.2
3,687,200 - +1.3
3,687,210 - +1.1
3,687,217 + +0.8
3,687,227 + -0.0
3,687,227 + -1.3
3,687,241 + +1.0
3,687,249 - +1.0
3,687,249 - +0.4
3,687,284 - +0.3
3,687,288 + +0.4
3,687,288 + +0.3
3,687,288 + +0.1
3,687,288 + -0.4
3,687,291 - +0.6
3,687,291 - +0.7
3,687,296 - +0.5
3,687,296 - -0.9
3,687,296 - -0.5
3,687,296 - +0.5
3,687,296 - -0.3
3,687,298 + -0.3
3,687,298 + +1.7
3,687,301 - +0.6
3,687,303 + -0.6
3,687,306 - +0.4
3,687,306 - -0.9
3,687,306 - -0.0
3,687,306 - +0.1
3,687,306 - +0.4
3,687,306 - +2.0
3,687,306 - -0.6
3,687,334 + +2.0
3,687,340 - +0.6

Or see this region's nucleotide sequence