Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3401 and Dsui_3402 are separated by 99 nucleotides Dsui_3402 and Dsui_3403 overlap by 20 nucleotides Dsui_3403 and Dsui_3404 are separated by 158 nucleotides
Dsui_3401: Dsui_3401 - putative Zn-dependent protease-like protein, at 3,647,664 to 3,649,103
_3401
Dsui_3402: Dsui_3402 - putative amidohydrolase, at 3,649,203 to 3,650,036
_3402
Dsui_3403: Dsui_3403 - TIGR02099 family protein, at 3,650,017 to 3,653,994
_3403
Dsui_3404: Dsui_3404 - glutamine synthetase adenylyltransferase, at 3,654,153 to 3,656,936
_3404
Position (kb)
3650
3651
3652
3653
3654 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3649.047 kb on - strand at 3649.062 kb on + strand at 3649.110 kb on + strand at 3649.111 kb on + strand at 3649.118 kb on - strand at 3649.118 kb on - strand at 3649.119 kb on - strand at 3649.143 kb on + strand at 3649.159 kb on + strand at 3649.159 kb on + strand at 3649.177 kb on - strand at 3649.181 kb on - strand at 3649.223 kb on - strand at 3649.272 kb on + strand at 3649.280 kb on - strand at 3649.280 kb on - strand at 3649.283 kb on + strand at 3649.318 kb on + strand at 3649.326 kb on - strand, within Dsui_3402 at 3649.540 kb on - strand, within Dsui_3402 at 3649.560 kb on + strand, within Dsui_3402 at 3649.568 kb on - strand, within Dsui_3402 at 3649.568 kb on - strand, within Dsui_3402 at 3649.634 kb on - strand, within Dsui_3402 at 3649.753 kb on - strand, within Dsui_3402 at 3649.771 kb on - strand, within Dsui_3402 at 3650.039 kb on + strand at 3650.039 kb on + strand at 3650.039 kb on + strand at 3650.096 kb on - strand at 3650.105 kb on - strand at 3653.970 kb on - strand at 3654.004 kb on - strand at 3654.054 kb on + strand at 3654.055 kb on + strand at 3654.062 kb on - strand at 3654.073 kb on - strand at 3654.090 kb on - strand at 3654.090 kb on - strand at 3654.090 kb on - strand at 3654.109 kb on - strand at 3654.126 kb on + strand at 3654.229 kb on + strand at 3654.407 kb on + strand at 3654.608 kb on + strand, within Dsui_3404 at 3654.875 kb on + strand, within Dsui_3404 at 3654.977 kb on + strand, within Dsui_3404
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,649,047 - -0.0 3,649,062 + +2.0 3,649,110 + +0.4 3,649,111 + +0.7 3,649,118 - +1.0 3,649,118 - +1.0 3,649,119 - +0.5 3,649,143 + -0.3 3,649,159 + -0.7 3,649,159 + -0.0 3,649,177 - -0.6 3,649,181 - +1.2 3,649,223 - +0.5 3,649,272 + -0.5 3,649,280 - -0.8 3,649,280 - +0.4 3,649,283 + -1.2 3,649,318 + -0.6 3,649,326 - Dsui_3402 0.15 +0.3 3,649,540 - Dsui_3402 0.40 -2.0 3,649,560 + Dsui_3402 0.43 +0.0 3,649,568 - Dsui_3402 0.44 -0.2 3,649,568 - Dsui_3402 0.44 -0.1 3,649,634 - Dsui_3402 0.52 +0.4 3,649,753 - Dsui_3402 0.66 +0.3 3,649,771 - Dsui_3402 0.68 -1.0 3,650,039 + -1.0 3,650,039 + -1.0 3,650,039 + +0.5 3,650,096 - -0.1 3,650,105 - +1.5 3,653,970 - -0.9 3,654,004 - +1.4 3,654,054 + +1.0 3,654,055 + +1.0 3,654,062 - -0.6 3,654,073 - +0.9 3,654,090 - +0.1 3,654,090 - -0.3 3,654,090 - +0.4 3,654,109 - +0.2 3,654,126 + -0.2 3,654,229 + +0.6 3,654,407 + +0.1 3,654,608 + Dsui_3404 0.16 -0.3 3,654,875 + Dsui_3404 0.26 -1.2 3,654,977 + Dsui_3404 0.30 +1.4
Or see this region's nucleotide sequence