Strain Fitness in Dechlorosoma suillum PS around Dsui_3403

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3401 and Dsui_3402 are separated by 99 nucleotidesDsui_3402 and Dsui_3403 overlap by 20 nucleotidesDsui_3403 and Dsui_3404 are separated by 158 nucleotides Dsui_3401: Dsui_3401 - putative Zn-dependent protease-like protein, at 3,647,664 to 3,649,103 _3401 Dsui_3402: Dsui_3402 - putative amidohydrolase, at 3,649,203 to 3,650,036 _3402 Dsui_3403: Dsui_3403 - TIGR02099 family protein, at 3,650,017 to 3,653,994 _3403 Dsui_3404: Dsui_3404 - glutamine synthetase adenylyltransferase, at 3,654,153 to 3,656,936 _3404 Position (kb) 3650 3651 3652 3653 3654Strain fitness (log2 ratio) -2 -1 0 1 2at 3649.047 kb on - strandat 3649.062 kb on + strandat 3649.110 kb on + strandat 3649.111 kb on + strandat 3649.118 kb on - strandat 3649.118 kb on - strandat 3649.119 kb on - strandat 3649.143 kb on + strandat 3649.159 kb on + strandat 3649.159 kb on + strandat 3649.177 kb on - strandat 3649.181 kb on - strandat 3649.223 kb on - strandat 3649.272 kb on + strandat 3649.280 kb on - strandat 3649.280 kb on - strandat 3649.283 kb on + strandat 3649.318 kb on + strandat 3649.326 kb on - strand, within Dsui_3402at 3649.540 kb on - strand, within Dsui_3402at 3649.560 kb on + strand, within Dsui_3402at 3649.568 kb on - strand, within Dsui_3402at 3649.568 kb on - strand, within Dsui_3402at 3649.634 kb on - strand, within Dsui_3402at 3649.753 kb on - strand, within Dsui_3402at 3649.771 kb on - strand, within Dsui_3402at 3650.039 kb on + strandat 3650.039 kb on + strandat 3650.039 kb on + strandat 3650.096 kb on - strandat 3650.105 kb on - strandat 3653.970 kb on - strandat 3654.004 kb on - strandat 3654.054 kb on + strandat 3654.055 kb on + strandat 3654.062 kb on - strandat 3654.073 kb on - strandat 3654.090 kb on - strandat 3654.090 kb on - strandat 3654.090 kb on - strandat 3654.109 kb on - strandat 3654.126 kb on + strandat 3654.229 kb on + strandat 3654.407 kb on + strandat 3654.608 kb on + strand, within Dsui_3404at 3654.875 kb on + strand, within Dsui_3404at 3654.977 kb on + strand, within Dsui_3404

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,649,047 - -0.0
3,649,062 + +2.0
3,649,110 + +0.4
3,649,111 + +0.7
3,649,118 - +1.0
3,649,118 - +1.0
3,649,119 - +0.5
3,649,143 + -0.3
3,649,159 + -0.7
3,649,159 + -0.0
3,649,177 - -0.6
3,649,181 - +1.2
3,649,223 - +0.5
3,649,272 + -0.5
3,649,280 - -0.8
3,649,280 - +0.4
3,649,283 + -1.2
3,649,318 + -0.6
3,649,326 - Dsui_3402 0.15 +0.3
3,649,540 - Dsui_3402 0.40 -2.0
3,649,560 + Dsui_3402 0.43 +0.0
3,649,568 - Dsui_3402 0.44 -0.2
3,649,568 - Dsui_3402 0.44 -0.1
3,649,634 - Dsui_3402 0.52 +0.4
3,649,753 - Dsui_3402 0.66 +0.3
3,649,771 - Dsui_3402 0.68 -1.0
3,650,039 + -1.0
3,650,039 + -1.0
3,650,039 + +0.5
3,650,096 - -0.1
3,650,105 - +1.5
3,653,970 - -0.9
3,654,004 - +1.4
3,654,054 + +1.0
3,654,055 + +1.0
3,654,062 - -0.6
3,654,073 - +0.9
3,654,090 - +0.1
3,654,090 - -0.3
3,654,090 - +0.4
3,654,109 - +0.2
3,654,126 + -0.2
3,654,229 + +0.6
3,654,407 + +0.1
3,654,608 + Dsui_3404 0.16 -0.3
3,654,875 + Dsui_3404 0.26 -1.2
3,654,977 + Dsui_3404 0.30 +1.4

Or see this region's nucleotide sequence