Strain Fitness in Dechlorosoma suillum PS around Dsui_3364

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3363 and Dsui_3364 are separated by 98 nucleotidesDsui_3364 and Dsui_3365 are separated by 251 nucleotidesDsui_3365 and Dsui_3366 are separated by 120 nucleotides Dsui_3363: Dsui_3363 - hypothetical protein, at 3,602,590 to 3,603,486 _3363 Dsui_3364: Dsui_3364 - alanine--tRNA ligase, at 3,603,585 to 3,606,278 _3364 Dsui_3365: Dsui_3365 - hypothetical protein, at 3,606,530 to 3,606,913 _3365 Dsui_3366: Dsui_3366 - glycerophosphoryl diester phosphodiesterase, at 3,607,034 to 3,607,840 _3366 Position (kb) 3603 3604 3605 3606 3607Strain fitness (log2 ratio) -1 0 1 2 3at 3602.588 kb on + strandat 3602.646 kb on - strandat 3602.653 kb on + strandat 3602.653 kb on + strandat 3602.661 kb on - strandat 3602.661 kb on - strandat 3602.685 kb on - strand, within Dsui_3363at 3602.700 kb on + strand, within Dsui_3363at 3602.705 kb on + strand, within Dsui_3363at 3602.705 kb on + strand, within Dsui_3363at 3602.709 kb on + strand, within Dsui_3363at 3602.710 kb on + strand, within Dsui_3363at 3602.722 kb on - strand, within Dsui_3363at 3602.753 kb on - strand, within Dsui_3363at 3602.760 kb on + strand, within Dsui_3363at 3602.768 kb on + strand, within Dsui_3363at 3602.768 kb on + strand, within Dsui_3363at 3602.768 kb on + strand, within Dsui_3363at 3602.768 kb on - strand, within Dsui_3363at 3602.776 kb on - strand, within Dsui_3363at 3602.778 kb on - strand, within Dsui_3363at 3602.820 kb on - strand, within Dsui_3363at 3602.893 kb on + strand, within Dsui_3363at 3602.914 kb on + strand, within Dsui_3363at 3602.922 kb on + strand, within Dsui_3363at 3602.922 kb on + strand, within Dsui_3363at 3602.922 kb on + strand, within Dsui_3363at 3602.930 kb on - strand, within Dsui_3363at 3602.930 kb on - strand, within Dsui_3363at 3602.930 kb on - strand, within Dsui_3363at 3602.945 kb on - strand, within Dsui_3363at 3602.971 kb on + strand, within Dsui_3363at 3602.991 kb on - strand, within Dsui_3363at 3603.034 kb on + strand, within Dsui_3363at 3603.042 kb on - strand, within Dsui_3363at 3603.042 kb on - strand, within Dsui_3363at 3603.042 kb on - strand, within Dsui_3363at 3603.050 kb on - strand, within Dsui_3363at 3603.085 kb on + strand, within Dsui_3363at 3603.095 kb on + strand, within Dsui_3363at 3603.095 kb on - strand, within Dsui_3363at 3603.102 kb on + strand, within Dsui_3363at 3603.116 kb on + strand, within Dsui_3363at 3603.189 kb on - strand, within Dsui_3363at 3603.246 kb on - strand, within Dsui_3363at 3603.266 kb on + strand, within Dsui_3363at 3603.291 kb on - strand, within Dsui_3363at 3603.305 kb on + strand, within Dsui_3363at 3603.305 kb on + strand, within Dsui_3363at 3603.305 kb on + strand, within Dsui_3363at 3603.310 kb on + strand, within Dsui_3363at 3603.313 kb on - strand, within Dsui_3363at 3603.313 kb on - strand, within Dsui_3363at 3603.319 kb on + strand, within Dsui_3363at 3603.337 kb on + strand, within Dsui_3363at 3603.338 kb on + strand, within Dsui_3363at 3603.366 kb on + strand, within Dsui_3363at 3603.408 kb on + strandat 3603.444 kb on + strandat 3603.444 kb on + strandat 3603.469 kb on - strandat 3603.486 kb on + strandat 3603.486 kb on + strandat 3603.489 kb on - strandat 3603.493 kb on + strandat 3603.493 kb on + strandat 3603.493 kb on + strandat 3603.501 kb on - strandat 3603.501 kb on - strandat 3603.542 kb on + strandat 3603.583 kb on + strandat 3603.591 kb on - strandat 3603.591 kb on - strandat 3603.591 kb on - strandat 3606.362 kb on - strandat 3606.402 kb on + strandat 3606.656 kb on + strandat 3606.702 kb on + strandat 3606.736 kb on - strandat 3606.737 kb on - strand, within Dsui_3365at 3606.810 kb on - strandat 3606.837 kb on - strandat 3606.866 kb on - strand, within Dsui_3365at 3606.866 kb on - strandat 3606.966 kb on - strandat 3607.017 kb on - strandat 3607.141 kb on - strand, within Dsui_3366at 3607.141 kb on - strand, within Dsui_3366at 3607.187 kb on - strand, within Dsui_3366

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,602,588 + -0.0
3,602,646 - -0.1
3,602,653 + +0.4
3,602,653 + +0.1
3,602,661 - +0.1
3,602,661 - -0.2
3,602,685 - Dsui_3363 0.11 -0.6
3,602,700 + Dsui_3363 0.12 -1.2
3,602,705 + Dsui_3363 0.13 +2.0
3,602,705 + Dsui_3363 0.13 +0.4
3,602,709 + Dsui_3363 0.13 -0.1
3,602,710 + Dsui_3363 0.13 +0.1
3,602,722 - Dsui_3363 0.15 -0.1
3,602,753 - Dsui_3363 0.18 -0.2
3,602,760 + Dsui_3363 0.19 -0.0
3,602,768 + Dsui_3363 0.20 -0.0
3,602,768 + Dsui_3363 0.20 -1.4
3,602,768 + Dsui_3363 0.20 -0.1
3,602,768 - Dsui_3363 0.20 -0.1
3,602,776 - Dsui_3363 0.21 -0.1
3,602,778 - Dsui_3363 0.21 +0.0
3,602,820 - Dsui_3363 0.26 +0.5
3,602,893 + Dsui_3363 0.34 -0.7
3,602,914 + Dsui_3363 0.36 -0.8
3,602,922 + Dsui_3363 0.37 -1.2
3,602,922 + Dsui_3363 0.37 -1.2
3,602,922 + Dsui_3363 0.37 -0.3
3,602,930 - Dsui_3363 0.38 -0.1
3,602,930 - Dsui_3363 0.38 -0.1
3,602,930 - Dsui_3363 0.38 -0.2
3,602,945 - Dsui_3363 0.40 +0.1
3,602,971 + Dsui_3363 0.42 -0.1
3,602,991 - Dsui_3363 0.45 +0.2
3,603,034 + Dsui_3363 0.49 -0.6
3,603,042 - Dsui_3363 0.50 +0.5
3,603,042 - Dsui_3363 0.50 +1.2
3,603,042 - Dsui_3363 0.50 -0.3
3,603,050 - Dsui_3363 0.51 +0.5
3,603,085 + Dsui_3363 0.55 -0.1
3,603,095 + Dsui_3363 0.56 +0.1
3,603,095 - Dsui_3363 0.56 +0.6
3,603,102 + Dsui_3363 0.57 -0.7
3,603,116 + Dsui_3363 0.59 +0.0
3,603,189 - Dsui_3363 0.67 -0.4
3,603,246 - Dsui_3363 0.73 -0.2
3,603,266 + Dsui_3363 0.75 +0.0
3,603,291 - Dsui_3363 0.78 -0.1
3,603,305 + Dsui_3363 0.80 +1.4
3,603,305 + Dsui_3363 0.80 +0.2
3,603,305 + Dsui_3363 0.80 +1.0
3,603,310 + Dsui_3363 0.80 +0.5
3,603,313 - Dsui_3363 0.81 +0.1
3,603,313 - Dsui_3363 0.81 +0.5
3,603,319 + Dsui_3363 0.81 -0.4
3,603,337 + Dsui_3363 0.83 -0.3
3,603,338 + Dsui_3363 0.83 +0.2
3,603,366 + Dsui_3363 0.87 -0.3
3,603,408 + +0.7
3,603,444 + -0.1
3,603,444 + -0.3
3,603,469 - +0.1
3,603,486 + +0.2
3,603,486 + +0.2
3,603,489 - +0.2
3,603,493 + +0.4
3,603,493 + +0.2
3,603,493 + +2.0
3,603,501 - +0.1
3,603,501 - -0.1
3,603,542 + +0.3
3,603,583 + -0.4
3,603,591 - -0.3
3,603,591 - +0.1
3,603,591 - -0.2
3,606,362 - +0.7
3,606,402 + -0.0
3,606,656 + +1.0
3,606,702 + +1.0
3,606,736 - +2.0
3,606,737 - Dsui_3365 0.54 +0.3
3,606,810 - +2.0
3,606,837 - +1.0
3,606,866 - Dsui_3365 0.88 -0.3
3,606,866 - +0.4
3,606,966 - +3.6
3,607,017 - -0.8
3,607,141 - Dsui_3366 0.13 -1.2
3,607,141 - Dsui_3366 0.13 -0.1
3,607,187 - Dsui_3366 0.19 -0.1

Or see this region's nucleotide sequence