Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3203 and Dsui_3204 are separated by 68 nucleotides Dsui_3204 and Dsui_3205 are separated by 90 nucleotides Dsui_3205 and Dsui_3206 are separated by 80 nucleotides
Dsui_3203: Dsui_3203 - arabinose efflux permease family protein, at 3,438,650 to 3,439,816
_3203
Dsui_3204: Dsui_3204 - chorismate synthase, at 3,439,885 to 3,440,991
_3204
Dsui_3205: Dsui_3205 - pseudouridine synthase, RluA family, at 3,441,082 to 3,441,735
_3205
Dsui_3206: Dsui_3206 - putative metal-binding protein, at 3,441,816 to 3,442,232
_3206
Position (kb)
3439
3440
3441 Strain fitness (log2 ratio)
-1
0
1 at 3438.906 kb on - strand, within Dsui_3203 at 3439.156 kb on + strand at 3439.202 kb on - strand, within Dsui_3203 at 3439.326 kb on - strand, within Dsui_3203 at 3439.443 kb on + strand at 3439.486 kb on - strand, within Dsui_3203 at 3439.513 kb on - strand, within Dsui_3203 at 3439.575 kb on - strand, within Dsui_3203 at 3439.669 kb on - strand, within Dsui_3203 at 3439.676 kb on + strand at 3441.044 kb on - strand at 3441.175 kb on - strand, within Dsui_3205 at 3441.175 kb on - strand, within Dsui_3205 at 3441.181 kb on - strand, within Dsui_3205 at 3441.186 kb on - strand, within Dsui_3205 at 3441.339 kb on - strand, within Dsui_3205 at 3441.396 kb on - strand, within Dsui_3205 at 3441.396 kb on - strand, within Dsui_3205 at 3441.534 kb on + strand at 3441.534 kb on + strand, within Dsui_3205 at 3441.557 kb on - strand, within Dsui_3205 at 3441.574 kb on - strand, within Dsui_3205 at 3441.614 kb on + strand at 3441.694 kb on - strand at 3441.697 kb on + strand at 3441.697 kb on + strand at 3441.781 kb on - strand at 3441.942 kb on + strand, within Dsui_3206
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,438,906 - Dsui_3203 0.22 +0.9 3,439,156 + +0.6 3,439,202 - Dsui_3203 0.47 +0.1 3,439,326 - Dsui_3203 0.58 -0.4 3,439,443 + +0.9 3,439,486 - Dsui_3203 0.72 +0.3 3,439,513 - Dsui_3203 0.74 -0.2 3,439,575 - Dsui_3203 0.79 +0.9 3,439,669 - Dsui_3203 0.87 +0.1 3,439,676 + +0.9 3,441,044 - -0.2 3,441,175 - Dsui_3205 0.14 +0.1 3,441,175 - Dsui_3205 0.14 +1.1 3,441,181 - Dsui_3205 0.15 +1.1 3,441,186 - Dsui_3205 0.16 +0.9 3,441,339 - Dsui_3205 0.39 +0.5 3,441,396 - Dsui_3205 0.48 +0.2 3,441,396 - Dsui_3205 0.48 +0.6 3,441,534 + -0.1 3,441,534 + Dsui_3205 0.69 -0.9 3,441,557 - Dsui_3205 0.73 +0.3 3,441,574 - Dsui_3205 0.75 -0.2 3,441,614 + -0.1 3,441,694 - +0.4 3,441,697 + +0.9 3,441,697 + +0.9 3,441,781 - +1.0 3,441,942 + Dsui_3206 0.30 +0.8
Or see this region's nucleotide sequence