Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3128 and Dsui_3129 are separated by 40 nucleotides Dsui_3129 and Dsui_3130 are separated by 244 nucleotides Dsui_3130 and Dsui_3131 are separated by 269 nucleotides Dsui_3131 and Dsui_3132 are separated by 5 nucleotides
Dsui_3128: Dsui_3128 - ribonuclease R, at 3,350,134 to 3,352,620
_3128
Dsui_3129: Dsui_3129 - tRNA-Leu, at 3,352,661 to 3,352,747
_3129
Dsui_3130: Dsui_3130 - tRNA-Leu, at 3,352,992 to 3,353,078
_3130
Dsui_3131: Dsui_3131 - adenylosuccinate synthase, at 3,353,348 to 3,354,658
_3131
Dsui_3132: Dsui_3132 - ATP phosphoribosyltransferase, regulatory subunit, at 3,354,664 to 3,355,818
_3132
Position (kb) 3353
3354
3355 Strain fitness (log2 ratio) -1
0
1 at 3352.415 kb on - strand at 3352.438 kb on + strand at 3352.958 kb on - strand at 3353.061 kb on + strand, within Dsui_3130 at 3353.232 kb on + strand at 3353.269 kb on + strand at 3353.269 kb on + strand at 3353.277 kb on - strand at 3353.277 kb on - strand at 3353.277 kb on - strand at 3353.339 kb on - strand at 3354.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,352,415 - -0.1 3,352,438 + +0.5 3,352,958 - +0.5 3,353,061 + Dsui_3130 0.79 -0.3 3,353,232 + -0.1 3,353,269 + +0.8 3,353,269 + +0.2 3,353,277 - +0.0 3,353,277 - +0.4 3,353,277 - +0.3 3,353,339 - +0.0 3,354,670 - +1.1
Or see this region's nucleotide sequence