Strain Fitness in Dechlorosoma suillum PS around Dsui_3100

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3098 and Dsui_3099 overlap by 4 nucleotidesDsui_3099 and Dsui_3100 are separated by 7 nucleotidesDsui_3100 and Dsui_3101 are separated by 108 nucleotides Dsui_3098: Dsui_3098 - alkylated DNA repair protein, at 3,316,549 to 3,317,211 _3098 Dsui_3099: Dsui_3099 - 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase, at 3,317,208 to 3,318,188 _3099 Dsui_3100: Dsui_3100 - putative permease, at 3,318,196 to 3,319,125 _3100 Dsui_3101: Dsui_3101 - transcriptional regulator, at 3,319,234 to 3,320,133 _3101 Position (kb) 3318 3319 3320Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3317.362 kb on + strandat 3317.417 kb on + strandat 3317.425 kb on - strandat 3317.429 kb on + strand, within Dsui_3099at 3317.443 kb on + strandat 3317.566 kb on + strand, within Dsui_3099at 3317.690 kb on - strandat 3317.690 kb on - strandat 3317.695 kb on - strandat 3317.789 kb on + strand, within Dsui_3099at 3317.974 kb on + strand, within Dsui_3099at 3317.993 kb on + strand, within Dsui_3099at 3318.063 kb on + strand, within Dsui_3099at 3318.210 kb on + strandat 3318.210 kb on + strandat 3318.218 kb on - strandat 3318.218 kb on - strandat 3318.724 kb on + strandat 3319.004 kb on - strandat 3319.047 kb on + strandat 3319.166 kb on + strandat 3319.166 kb on + strandat 3319.166 kb on + strandat 3319.224 kb on + strandat 3319.265 kb on - strandat 3319.275 kb on + strandat 3319.330 kb on + strand, within Dsui_3101at 3319.364 kb on + strand, within Dsui_3101at 3319.391 kb on + strand, within Dsui_3101at 3319.399 kb on - strandat 3319.731 kb on + strand, within Dsui_3101at 3319.765 kb on + strand, within Dsui_3101at 3319.770 kb on + strand, within Dsui_3101at 3320.041 kb on + strand, within Dsui_3101

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,317,362 + +3.5
3,317,417 + +0.9
3,317,425 - -0.1
3,317,429 + Dsui_3099 0.23 -0.1
3,317,443 + +0.9
3,317,566 + Dsui_3099 0.36 +0.4
3,317,690 - +0.9
3,317,690 - +1.9
3,317,695 - +1.9
3,317,789 + Dsui_3099 0.59 -1.9
3,317,974 + Dsui_3099 0.78 +0.5
3,317,993 + Dsui_3099 0.80 +0.7
3,318,063 + Dsui_3099 0.87 -1.2
3,318,210 + -0.4
3,318,210 + +1.9
3,318,218 - -0.7
3,318,218 - -0.7
3,318,724 + +1.9
3,319,004 - +1.3
3,319,047 + +0.9
3,319,166 + +1.9
3,319,166 + +0.9
3,319,166 + +1.5
3,319,224 + +0.3
3,319,265 - +1.9
3,319,275 + +0.2
3,319,330 + Dsui_3101 0.11 -1.2
3,319,364 + Dsui_3101 0.14 +0.7
3,319,391 + Dsui_3101 0.17 -0.1
3,319,399 - -0.7
3,319,731 + Dsui_3101 0.55 +0.6
3,319,765 + Dsui_3101 0.59 -1.7
3,319,770 + Dsui_3101 0.60 +0.7
3,320,041 + Dsui_3101 0.90 +1.0

Or see this region's nucleotide sequence