Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3009 and Dsui_3010 are separated by 21 nucleotides Dsui_3010 and Dsui_3011 are separated by 13 nucleotides Dsui_3011 and Dsui_3012 are separated by 2 nucleotides
Dsui_3009: Dsui_3009 - Ni,Fe-hydrogenase I large subunit, at 3,221,890 to 3,223,602
_3009
Dsui_3010: Dsui_3010 - polysulfide reductase, at 3,223,624 to 3,224,781
_3010
Dsui_3011: Dsui_3011 - Fe-S-cluster-containing hydrogenase subunit, at 3,224,795 to 3,225,769
_3011
Dsui_3012: Dsui_3012 - hydrogenase (NiFe) small subunit HydA, at 3,225,772 to 3,226,953
_3012
Position (kb)
3223
3224
3225 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3222.662 kb on + strand at 3222.739 kb on - strand, within Dsui_3009 at 3222.768 kb on - strand, within Dsui_3009 at 3222.773 kb on - strand, within Dsui_3009 at 3222.827 kb on + strand at 3223.153 kb on - strand at 3223.243 kb on + strand at 3223.265 kb on + strand, within Dsui_3009 at 3223.273 kb on - strand at 3223.405 kb on - strand, within Dsui_3009 at 3223.631 kb on + strand at 3223.632 kb on + strand at 3223.821 kb on + strand at 3223.951 kb on + strand, within Dsui_3010 at 3224.158 kb on - strand, within Dsui_3010 at 3224.242 kb on - strand, within Dsui_3010 at 3224.293 kb on - strand at 3224.442 kb on + strand, within Dsui_3010 at 3224.469 kb on + strand, within Dsui_3010 at 3224.621 kb on - strand at 3224.792 kb on + strand at 3224.879 kb on + strand at 3225.009 kb on + strand at 3225.467 kb on - strand, within Dsui_3011 at 3225.499 kb on + strand at 3225.506 kb on + strand, within Dsui_3011 at 3225.542 kb on - strand at 3225.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,222,662 + +1.9 3,222,739 - Dsui_3009 0.50 +0.3 3,222,768 - Dsui_3009 0.51 -0.7 3,222,773 - Dsui_3009 0.52 -2.0 3,222,827 + +1.9 3,223,153 - +0.3 3,223,243 + +2.9 3,223,265 + Dsui_3009 0.80 -0.1 3,223,273 - -0.7 3,223,405 - Dsui_3009 0.88 -1.1 3,223,631 + +1.1 3,223,632 + +0.9 3,223,821 + +0.6 3,223,951 + Dsui_3010 0.28 -0.9 3,224,158 - Dsui_3010 0.46 +0.2 3,224,242 - Dsui_3010 0.53 +0.3 3,224,293 - +1.9 3,224,442 + Dsui_3010 0.71 -1.1 3,224,469 + Dsui_3010 0.73 +0.5 3,224,621 - +2.5 3,224,792 + +1.9 3,224,879 + -0.7 3,225,009 + +0.9 3,225,467 - Dsui_3011 0.69 +0.3 3,225,499 + +0.3 3,225,506 + Dsui_3011 0.73 +0.7 3,225,542 - -0.4 3,225,557 - -0.1
Or see this region's nucleotide sequence