Strain Fitness in Dechlorosoma suillum PS around Dsui_3010

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3009 and Dsui_3010 are separated by 21 nucleotidesDsui_3010 and Dsui_3011 are separated by 13 nucleotidesDsui_3011 and Dsui_3012 are separated by 2 nucleotides Dsui_3009: Dsui_3009 - Ni,Fe-hydrogenase I large subunit, at 3,221,890 to 3,223,602 _3009 Dsui_3010: Dsui_3010 - polysulfide reductase, at 3,223,624 to 3,224,781 _3010 Dsui_3011: Dsui_3011 - Fe-S-cluster-containing hydrogenase subunit, at 3,224,795 to 3,225,769 _3011 Dsui_3012: Dsui_3012 - hydrogenase (NiFe) small subunit HydA, at 3,225,772 to 3,226,953 _3012 Position (kb) 3223 3224 3225Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3222.662 kb on + strandat 3222.739 kb on - strand, within Dsui_3009at 3222.768 kb on - strand, within Dsui_3009at 3222.773 kb on - strand, within Dsui_3009at 3222.827 kb on + strandat 3223.153 kb on - strandat 3223.243 kb on + strandat 3223.265 kb on + strand, within Dsui_3009at 3223.273 kb on - strandat 3223.405 kb on - strand, within Dsui_3009at 3223.631 kb on + strandat 3223.632 kb on + strandat 3223.821 kb on + strandat 3223.951 kb on + strand, within Dsui_3010at 3224.158 kb on - strand, within Dsui_3010at 3224.242 kb on - strand, within Dsui_3010at 3224.293 kb on - strandat 3224.442 kb on + strand, within Dsui_3010at 3224.469 kb on + strand, within Dsui_3010at 3224.621 kb on - strandat 3224.792 kb on + strandat 3224.879 kb on + strandat 3225.009 kb on + strandat 3225.467 kb on - strand, within Dsui_3011at 3225.499 kb on + strandat 3225.506 kb on + strand, within Dsui_3011at 3225.542 kb on - strandat 3225.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,222,662 + +1.9
3,222,739 - Dsui_3009 0.50 +0.3
3,222,768 - Dsui_3009 0.51 -0.7
3,222,773 - Dsui_3009 0.52 -2.0
3,222,827 + +1.9
3,223,153 - +0.3
3,223,243 + +2.9
3,223,265 + Dsui_3009 0.80 -0.1
3,223,273 - -0.7
3,223,405 - Dsui_3009 0.88 -1.1
3,223,631 + +1.1
3,223,632 + +0.9
3,223,821 + +0.6
3,223,951 + Dsui_3010 0.28 -0.9
3,224,158 - Dsui_3010 0.46 +0.2
3,224,242 - Dsui_3010 0.53 +0.3
3,224,293 - +1.9
3,224,442 + Dsui_3010 0.71 -1.1
3,224,469 + Dsui_3010 0.73 +0.5
3,224,621 - +2.5
3,224,792 + +1.9
3,224,879 + -0.7
3,225,009 + +0.9
3,225,467 - Dsui_3011 0.69 +0.3
3,225,499 + +0.3
3,225,506 + Dsui_3011 0.73 +0.7
3,225,542 - -0.4
3,225,557 - -0.1

Or see this region's nucleotide sequence