Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2955 and Dsui_2956 overlap by 4 nucleotides Dsui_2956 and Dsui_2957 overlap by 7 nucleotides Dsui_2957 and Dsui_2958 overlap by 4 nucleotides Dsui_2958 and Dsui_2959 are separated by 13 nucleotides
Dsui_2955: Dsui_2955 - cobalamin biosynthesis protein CbiM, at 3,164,634 to 3,165,311
_2955
Dsui_2956: Dsui_2956 - ABC-type cobalt transport system, periplasmic component, at 3,165,308 to 3,165,679
_2956
Dsui_2957: Dsui_2957 - cobalt ABC transporter, permease protein CbiQ, at 3,165,673 to 3,166,404
_2957
Dsui_2958: Dsui_2958 - cobalt transport protein ATP-binding subunit, at 3,166,401 to 3,167,240
_2958
Dsui_2959: Dsui_2959 - precorrin-4 C11-methyltransferase, at 3,167,254 to 3,168,057
_2959
Position (kb)
3165
3166
3167 Strain fitness (log2 ratio)
-1
0
1 at 3164.790 kb on - strand at 3165.119 kb on + strand, within Dsui_2955 at 3165.119 kb on + strand, within Dsui_2955 at 3165.240 kb on + strand, within Dsui_2955 at 3165.259 kb on + strand at 3165.367 kb on - strand, within Dsui_2956 at 3165.575 kb on + strand, within Dsui_2956 at 3165.650 kb on + strand at 3166.105 kb on - strand, within Dsui_2957 at 3166.105 kb on - strand at 3166.154 kb on - strand at 3166.479 kb on - strand at 3166.534 kb on + strand, within Dsui_2958 at 3166.563 kb on - strand at 3166.916 kb on + strand, within Dsui_2958 at 3166.947 kb on + strand, within Dsui_2958 at 3166.947 kb on + strand, within Dsui_2958 at 3166.982 kb on + strand, within Dsui_2958 at 3166.990 kb on - strand at 3167.074 kb on + strand, within Dsui_2958 at 3167.197 kb on + strand at 3167.385 kb on - strand, within Dsui_2959
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,164,790 - +0.9 3,165,119 + Dsui_2955 0.72 +0.2 3,165,119 + Dsui_2955 0.72 -0.3 3,165,240 + Dsui_2955 0.89 -0.1 3,165,259 + +0.3 3,165,367 - Dsui_2956 0.16 -0.1 3,165,575 + Dsui_2956 0.72 +0.4 3,165,650 + -0.0 3,166,105 - Dsui_2957 0.59 +0.6 3,166,105 - +0.6 3,166,154 - +0.3 3,166,479 - +0.6 3,166,534 + Dsui_2958 0.16 -0.8 3,166,563 - -0.1 3,166,916 + Dsui_2958 0.61 +0.6 3,166,947 + Dsui_2958 0.65 -0.4 3,166,947 + Dsui_2958 0.65 +0.1 3,166,982 + Dsui_2958 0.69 -0.9 3,166,990 - +1.3 3,167,074 + Dsui_2958 0.80 +0.2 3,167,197 + +0.2 3,167,385 - Dsui_2959 0.16 +0.6
Or see this region's nucleotide sequence