Strain Fitness in Dechlorosoma suillum PS around Dsui_2957

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2955 and Dsui_2956 overlap by 4 nucleotidesDsui_2956 and Dsui_2957 overlap by 7 nucleotidesDsui_2957 and Dsui_2958 overlap by 4 nucleotidesDsui_2958 and Dsui_2959 are separated by 13 nucleotides Dsui_2955: Dsui_2955 - cobalamin biosynthesis protein CbiM, at 3,164,634 to 3,165,311 _2955 Dsui_2956: Dsui_2956 - ABC-type cobalt transport system, periplasmic component, at 3,165,308 to 3,165,679 _2956 Dsui_2957: Dsui_2957 - cobalt ABC transporter, permease protein CbiQ, at 3,165,673 to 3,166,404 _2957 Dsui_2958: Dsui_2958 - cobalt transport protein ATP-binding subunit, at 3,166,401 to 3,167,240 _2958 Dsui_2959: Dsui_2959 - precorrin-4 C11-methyltransferase, at 3,167,254 to 3,168,057 _2959 Position (kb) 3165 3166 3167Strain fitness (log2 ratio) -1 0 1at 3164.790 kb on - strandat 3165.119 kb on + strand, within Dsui_2955at 3165.119 kb on + strand, within Dsui_2955at 3165.240 kb on + strand, within Dsui_2955at 3165.259 kb on + strandat 3165.367 kb on - strand, within Dsui_2956at 3165.575 kb on + strand, within Dsui_2956at 3165.650 kb on + strandat 3166.105 kb on - strand, within Dsui_2957at 3166.105 kb on - strandat 3166.154 kb on - strandat 3166.479 kb on - strandat 3166.534 kb on + strand, within Dsui_2958at 3166.563 kb on - strandat 3166.916 kb on + strand, within Dsui_2958at 3166.947 kb on + strand, within Dsui_2958at 3166.947 kb on + strand, within Dsui_2958at 3166.982 kb on + strand, within Dsui_2958at 3166.990 kb on - strandat 3167.074 kb on + strand, within Dsui_2958at 3167.197 kb on + strandat 3167.385 kb on - strand, within Dsui_2959

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,164,790 - +0.9
3,165,119 + Dsui_2955 0.72 +0.2
3,165,119 + Dsui_2955 0.72 -0.3
3,165,240 + Dsui_2955 0.89 -0.1
3,165,259 + +0.3
3,165,367 - Dsui_2956 0.16 -0.1
3,165,575 + Dsui_2956 0.72 +0.4
3,165,650 + -0.0
3,166,105 - Dsui_2957 0.59 +0.6
3,166,105 - +0.6
3,166,154 - +0.3
3,166,479 - +0.6
3,166,534 + Dsui_2958 0.16 -0.8
3,166,563 - -0.1
3,166,916 + Dsui_2958 0.61 +0.6
3,166,947 + Dsui_2958 0.65 -0.4
3,166,947 + Dsui_2958 0.65 +0.1
3,166,982 + Dsui_2958 0.69 -0.9
3,166,990 - +1.3
3,167,074 + Dsui_2958 0.80 +0.2
3,167,197 + +0.2
3,167,385 - Dsui_2959 0.16 +0.6

Or see this region's nucleotide sequence