Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2942 and Dsui_2943 are separated by 88 nucleotides Dsui_2943 and Dsui_2944 are separated by 149 nucleotides
Dsui_2942: Dsui_2942 - ABC-type Fe3+ transport system, permease component, at 3,147,011 to 3,148,663
_2942
Dsui_2943: Dsui_2943 - ABC-type spermidine/putrescine transport system, ATPase component, at 3,148,752 to 3,149,822
_2943
Dsui_2944: Dsui_2944 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,149,972 to 3,151,684
_2944
Position (kb)
3148
3149
3150 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3147.827 kb on - strand, within Dsui_2942 at 3148.009 kb on - strand, within Dsui_2942 at 3148.052 kb on - strand, within Dsui_2942 at 3148.096 kb on - strand, within Dsui_2942 at 3148.134 kb on - strand, within Dsui_2942 at 3148.134 kb on - strand, within Dsui_2942 at 3148.169 kb on - strand, within Dsui_2942 at 3148.169 kb on - strand, within Dsui_2942 at 3148.208 kb on + strand at 3148.218 kb on - strand, within Dsui_2942 at 3148.286 kb on - strand, within Dsui_2942 at 3148.318 kb on - strand, within Dsui_2942 at 3148.318 kb on - strand, within Dsui_2942 at 3148.318 kb on - strand, within Dsui_2942 at 3148.318 kb on - strand, within Dsui_2942 at 3148.363 kb on - strand, within Dsui_2942 at 3148.367 kb on + strand at 3148.454 kb on - strand, within Dsui_2942 at 3148.465 kb on + strand at 3148.468 kb on - strand, within Dsui_2942 at 3148.495 kb on + strand, within Dsui_2942 at 3148.587 kb on + strand at 3148.732 kb on + strand at 3148.732 kb on + strand at 3148.744 kb on + strand at 3148.744 kb on + strand at 3148.752 kb on - strand at 3148.752 kb on - strand at 3148.784 kb on + strand at 3148.784 kb on + strand at 3148.792 kb on - strand at 3148.803 kb on + strand at 3149.019 kb on - strand, within Dsui_2943 at 3149.060 kb on - strand at 3149.247 kb on + strand, within Dsui_2943 at 3149.326 kb on + strand, within Dsui_2943 at 3149.336 kb on + strand, within Dsui_2943 at 3149.406 kb on + strand, within Dsui_2943 at 3149.462 kb on + strand, within Dsui_2943 at 3149.479 kb on + strand, within Dsui_2943 at 3149.597 kb on + strand, within Dsui_2943 at 3149.635 kb on - strand, within Dsui_2943 at 3149.654 kb on + strand, within Dsui_2943 at 3149.681 kb on + strand, within Dsui_2943 at 3149.689 kb on - strand at 3149.689 kb on - strand at 3149.689 kb on - strand at 3149.730 kb on - strand at 3149.743 kb on + strand at 3149.781 kb on - strand at 3149.968 kb on + strand at 3149.968 kb on + strand at 3150.066 kb on - strand at 3150.124 kb on + strand at 3150.126 kb on - strand at 3150.140 kb on + strand at 3150.239 kb on + strand, within Dsui_2944 at 3150.239 kb on + strand, within Dsui_2944 at 3150.247 kb on - strand at 3150.277 kb on + strand, within Dsui_2944 at 3150.385 kb on + strand, within Dsui_2944 at 3150.397 kb on - strand, within Dsui_2944 at 3150.438 kb on - strand, within Dsui_2944 at 3150.475 kb on + strand, within Dsui_2944 at 3150.483 kb on - strand, within Dsui_2944 at 3150.541 kb on + strand, within Dsui_2944 at 3150.597 kb on - strand, within Dsui_2944 at 3150.705 kb on - strand, within Dsui_2944 at 3150.721 kb on + strand, within Dsui_2944 at 3150.721 kb on + strand, within Dsui_2944 at 3150.729 kb on - strand, within Dsui_2944 at 3150.798 kb on + strand, within Dsui_2944
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,147,827 - Dsui_2942 0.49 +0.3 3,148,009 - Dsui_2942 0.60 +0.2 3,148,052 - Dsui_2942 0.63 +0.6 3,148,096 - Dsui_2942 0.66 +0.9 3,148,134 - Dsui_2942 0.68 +0.3 3,148,134 - Dsui_2942 0.68 -2.2 3,148,169 - Dsui_2942 0.70 -0.4 3,148,169 - Dsui_2942 0.70 +0.1 3,148,208 + +0.9 3,148,218 - Dsui_2942 0.73 +0.7 3,148,286 - Dsui_2942 0.77 -0.1 3,148,318 - Dsui_2942 0.79 +2.2 3,148,318 - Dsui_2942 0.79 +0.6 3,148,318 - Dsui_2942 0.79 -0.4 3,148,318 - Dsui_2942 0.79 +0.8 3,148,363 - Dsui_2942 0.82 +0.3 3,148,367 + +0.3 3,148,454 - Dsui_2942 0.87 -1.0 3,148,465 + +1.9 3,148,468 - Dsui_2942 0.88 +0.8 3,148,495 + Dsui_2942 0.90 -0.7 3,148,587 + +0.9 3,148,732 + +1.8 3,148,732 + -0.2 3,148,744 + -0.5 3,148,744 + +0.7 3,148,752 - -0.9 3,148,752 - +0.9 3,148,784 + +0.2 3,148,784 + -0.0 3,148,792 - +1.9 3,148,803 + -0.1 3,149,019 - Dsui_2943 0.25 -0.4 3,149,060 - -0.1 3,149,247 + Dsui_2943 0.46 -0.0 3,149,326 + Dsui_2943 0.54 +0.7 3,149,336 + Dsui_2943 0.55 +0.4 3,149,406 + Dsui_2943 0.61 -0.0 3,149,462 + Dsui_2943 0.66 +0.9 3,149,479 + Dsui_2943 0.68 -0.0 3,149,597 + Dsui_2943 0.79 -1.0 3,149,635 - Dsui_2943 0.82 +1.1 3,149,654 + Dsui_2943 0.84 -0.5 3,149,681 + Dsui_2943 0.87 +0.2 3,149,689 - +1.9 3,149,689 - +3.5 3,149,689 - +0.3 3,149,730 - +0.5 3,149,743 + -0.6 3,149,781 - -0.2 3,149,968 + +0.5 3,149,968 + +0.1 3,150,066 - -1.9 3,150,124 + -0.2 3,150,126 - +0.3 3,150,140 + +0.6 3,150,239 + Dsui_2944 0.16 +0.7 3,150,239 + Dsui_2944 0.16 +0.3 3,150,247 - +0.7 3,150,277 + Dsui_2944 0.18 +0.2 3,150,385 + Dsui_2944 0.24 +0.5 3,150,397 - Dsui_2944 0.25 -0.6 3,150,438 - Dsui_2944 0.27 -0.4 3,150,475 + Dsui_2944 0.29 +0.3 3,150,483 - Dsui_2944 0.30 -0.1 3,150,541 + Dsui_2944 0.33 -0.7 3,150,597 - Dsui_2944 0.36 +1.7 3,150,705 - Dsui_2944 0.43 -1.1 3,150,721 + Dsui_2944 0.44 -0.3 3,150,721 + Dsui_2944 0.44 -0.2 3,150,729 - Dsui_2944 0.44 +0.2 3,150,798 + Dsui_2944 0.48 +1.5
Or see this region's nucleotide sequence