Strain Fitness in Dechlorosoma suillum PS around Dsui_2914

Experiment: rich media with sodium chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2912 and Dsui_2913 are separated by 92 nucleotidesDsui_2913 and Dsui_2914 are separated by 29 nucleotidesDsui_2914 and Dsui_2915 are separated by 133 nucleotides Dsui_2912: Dsui_2912 - putative xylanase/chitin deacetylase, at 3,114,951 to 3,115,859 _2912 Dsui_2913: Dsui_2913 - dihydroxynaphthoate synthase, at 3,115,952 to 3,116,782 _2913 Dsui_2914: Dsui_2914 - cytochrome b, at 3,116,812 to 3,117,429 _2914 Dsui_2915: Dsui_2915 - o-succinylbenzoic acid synthetase, at 3,117,563 to 3,118,627 _2915 Position (kb) 3116 3117 3118Strain fitness (log2 ratio) -1 0 1 2at 3115.959 kb on + strandat 3115.977 kb on - strandat 3116.040 kb on - strand, within Dsui_2913at 3116.184 kb on + strand, within Dsui_2913at 3116.278 kb on + strand, within Dsui_2913at 3116.335 kb on + strand, within Dsui_2913at 3116.399 kb on - strandat 3116.509 kb on - strandat 3116.512 kb on + strand, within Dsui_2913at 3116.682 kb on + strand, within Dsui_2913at 3116.832 kb on + strandat 3116.883 kb on - strand, within Dsui_2914at 3116.950 kb on - strandat 3116.955 kb on - strandat 3116.984 kb on - strand, within Dsui_2914at 3116.997 kb on + strandat 3117.098 kb on + strandat 3117.162 kb on + strandat 3117.492 kb on - strandat 3117.555 kb on - strandat 3117.596 kb on + strandat 3117.665 kb on - strandat 3117.784 kb on - strand, within Dsui_2915at 3117.914 kb on - strandat 3117.995 kb on + strandat 3118.222 kb on + strand, within Dsui_2915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
remove
3,115,959 + +0.5
3,115,977 - -0.3
3,116,040 - Dsui_2913 0.11 +0.4
3,116,184 + Dsui_2913 0.28 +0.2
3,116,278 + Dsui_2913 0.39 -1.3
3,116,335 + Dsui_2913 0.46 +0.1
3,116,399 - +0.9
3,116,509 - +0.1
3,116,512 + Dsui_2913 0.67 -0.2
3,116,682 + Dsui_2913 0.88 -0.3
3,116,832 + +1.4
3,116,883 - Dsui_2914 0.11 -0.4
3,116,950 - -0.1
3,116,955 - +0.4
3,116,984 - Dsui_2914 0.28 -0.7
3,116,997 + +1.4
3,117,098 + -0.6
3,117,162 + +0.9
3,117,492 - -0.1
3,117,555 - +0.9
3,117,596 + +0.2
3,117,665 - -0.1
3,117,784 - Dsui_2915 0.21 -0.6
3,117,914 - +1.9
3,117,995 + -0.4
3,118,222 + Dsui_2915 0.62 +0.6

Or see this region's nucleotide sequence