Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2896 and Dsui_2897 are separated by 15 nucleotides Dsui_2897 and Dsui_2898 are separated by 9 nucleotides Dsui_2898 and Dsui_2899 are separated by 42 nucleotides Dsui_2899 and Dsui_2900 overlap by 4 nucleotides
Dsui_2896: Dsui_2896 - outer membrane cobalamin receptor protein, at 3,097,437 to 3,099,677
_2896
Dsui_2897: Dsui_2897 - deacetylase, histone deacetylase/acetoin utilization protein, at 3,099,693 to 3,100,595
_2897
Dsui_2898: Dsui_2898 - yjeF-like protein, hydroxyethylthiazole kinase-related protein, at 3,100,605 to 3,102,113
_2898
Dsui_2899: Dsui_2899 - putative permease, DMT superfamily, at 3,102,156 to 3,103,034
_2899
Dsui_2900: Dsui_2900 - glutamate synthase family protein, at 3,103,031 to 3,104,515
_2900
Position (kb)
3100
3101
3102
3103 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3099.701 kb on + strand at 3099.701 kb on - strand at 3099.725 kb on + strand at 3099.845 kb on + strand at 3099.948 kb on + strand, within Dsui_2897 at 3100.008 kb on - strand at 3100.010 kb on + strand, within Dsui_2897 at 3100.243 kb on - strand at 3100.376 kb on + strand, within Dsui_2897 at 3100.443 kb on - strand at 3101.053 kb on - strand at 3101.063 kb on + strand, within Dsui_2898 at 3101.145 kb on + strand at 3101.152 kb on + strand at 3101.181 kb on - strand at 3101.506 kb on - strand at 3101.702 kb on + strand at 3101.825 kb on - strand at 3101.970 kb on + strand at 3102.045 kb on - strand at 3102.224 kb on + strand at 3102.236 kb on + strand at 3102.270 kb on + strand, within Dsui_2899 at 3102.333 kb on - strand at 3102.344 kb on - strand at 3102.433 kb on + strand, within Dsui_2899 at 3102.479 kb on + strand, within Dsui_2899 at 3102.581 kb on + strand, within Dsui_2899 at 3102.618 kb on + strand, within Dsui_2899 at 3102.618 kb on + strand, within Dsui_2899 at 3102.620 kb on - strand at 3102.623 kb on + strand, within Dsui_2899 at 3102.643 kb on + strand, within Dsui_2899 at 3102.724 kb on - strand at 3102.787 kb on + strand, within Dsui_2899 at 3102.795 kb on - strand at 3102.797 kb on - strand, within Dsui_2899 at 3102.800 kb on - strand at 3103.050 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 3,099,701 + -0.0 3,099,701 - -0.5 3,099,725 + -0.5 3,099,845 + +1.4 3,099,948 + Dsui_2897 0.28 -1.0 3,100,008 - -0.0 3,100,010 + Dsui_2897 0.35 -0.1 3,100,243 - +2.0 3,100,376 + Dsui_2897 0.76 -0.0 3,100,443 - +2.0 3,101,053 - -0.0 3,101,063 + Dsui_2898 0.30 +0.1 3,101,145 + +3.0 3,101,152 + +1.0 3,101,181 - +0.4 3,101,506 - +0.4 3,101,702 + +2.0 3,101,825 - +2.0 3,101,970 + +0.0 3,102,045 - +1.0 3,102,224 + +0.2 3,102,236 + -0.2 3,102,270 + Dsui_2899 0.13 -0.0 3,102,333 - +1.0 3,102,344 - +1.0 3,102,433 + Dsui_2899 0.32 -1.4 3,102,479 + Dsui_2899 0.37 +0.2 3,102,581 + Dsui_2899 0.48 -0.3 3,102,618 + Dsui_2899 0.53 -0.3 3,102,618 + Dsui_2899 0.53 +0.1 3,102,620 - +0.4 3,102,623 + Dsui_2899 0.53 -0.0 3,102,643 + Dsui_2899 0.55 +0.2 3,102,724 - +0.4 3,102,787 + Dsui_2899 0.72 -0.1 3,102,795 - +0.1 3,102,797 - Dsui_2899 0.73 +1.2 3,102,800 - +2.0 3,103,050 + -0.1
Or see this region's nucleotide sequence