Strain Fitness in Dechlorosoma suillum PS around Dsui_2898

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2896 and Dsui_2897 are separated by 15 nucleotidesDsui_2897 and Dsui_2898 are separated by 9 nucleotidesDsui_2898 and Dsui_2899 are separated by 42 nucleotidesDsui_2899 and Dsui_2900 overlap by 4 nucleotides Dsui_2896: Dsui_2896 - outer membrane cobalamin receptor protein, at 3,097,437 to 3,099,677 _2896 Dsui_2897: Dsui_2897 - deacetylase, histone deacetylase/acetoin utilization protein, at 3,099,693 to 3,100,595 _2897 Dsui_2898: Dsui_2898 - yjeF-like protein, hydroxyethylthiazole kinase-related protein, at 3,100,605 to 3,102,113 _2898 Dsui_2899: Dsui_2899 - putative permease, DMT superfamily, at 3,102,156 to 3,103,034 _2899 Dsui_2900: Dsui_2900 - glutamate synthase family protein, at 3,103,031 to 3,104,515 _2900 Position (kb) 3100 3101 3102 3103Strain fitness (log2 ratio) -1 0 1 2 3at 3099.701 kb on + strandat 3099.701 kb on - strandat 3099.725 kb on + strandat 3099.845 kb on + strandat 3099.948 kb on + strand, within Dsui_2897at 3100.008 kb on - strandat 3100.010 kb on + strand, within Dsui_2897at 3100.243 kb on - strandat 3100.376 kb on + strand, within Dsui_2897at 3100.443 kb on - strandat 3101.053 kb on - strandat 3101.063 kb on + strand, within Dsui_2898at 3101.145 kb on + strandat 3101.152 kb on + strandat 3101.181 kb on - strandat 3101.506 kb on - strandat 3101.702 kb on + strandat 3101.825 kb on - strandat 3101.970 kb on + strandat 3102.045 kb on - strandat 3102.224 kb on + strandat 3102.236 kb on + strandat 3102.270 kb on + strand, within Dsui_2899at 3102.333 kb on - strandat 3102.344 kb on - strandat 3102.433 kb on + strand, within Dsui_2899at 3102.479 kb on + strand, within Dsui_2899at 3102.581 kb on + strand, within Dsui_2899at 3102.618 kb on + strand, within Dsui_2899at 3102.618 kb on + strand, within Dsui_2899at 3102.620 kb on - strandat 3102.623 kb on + strand, within Dsui_2899at 3102.643 kb on + strand, within Dsui_2899at 3102.724 kb on - strandat 3102.787 kb on + strand, within Dsui_2899at 3102.795 kb on - strandat 3102.797 kb on - strand, within Dsui_2899at 3102.800 kb on - strandat 3103.050 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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3,099,701 + -0.0
3,099,701 - -0.5
3,099,725 + -0.5
3,099,845 + +1.4
3,099,948 + Dsui_2897 0.28 -1.0
3,100,008 - -0.0
3,100,010 + Dsui_2897 0.35 -0.1
3,100,243 - +2.0
3,100,376 + Dsui_2897 0.76 -0.0
3,100,443 - +2.0
3,101,053 - -0.0
3,101,063 + Dsui_2898 0.30 +0.1
3,101,145 + +3.0
3,101,152 + +1.0
3,101,181 - +0.4
3,101,506 - +0.4
3,101,702 + +2.0
3,101,825 - +2.0
3,101,970 + +0.0
3,102,045 - +1.0
3,102,224 + +0.2
3,102,236 + -0.2
3,102,270 + Dsui_2899 0.13 -0.0
3,102,333 - +1.0
3,102,344 - +1.0
3,102,433 + Dsui_2899 0.32 -1.4
3,102,479 + Dsui_2899 0.37 +0.2
3,102,581 + Dsui_2899 0.48 -0.3
3,102,618 + Dsui_2899 0.53 -0.3
3,102,618 + Dsui_2899 0.53 +0.1
3,102,620 - +0.4
3,102,623 + Dsui_2899 0.53 -0.0
3,102,643 + Dsui_2899 0.55 +0.2
3,102,724 - +0.4
3,102,787 + Dsui_2899 0.72 -0.1
3,102,795 - +0.1
3,102,797 - Dsui_2899 0.73 +1.2
3,102,800 - +2.0
3,103,050 + -0.1

Or see this region's nucleotide sequence