Strain Fitness in Dechlorosoma suillum PS around Dsui_2665

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2662 and Dsui_2663 are separated by 21 nucleotidesDsui_2663 and Dsui_2664 are separated by 7 nucleotidesDsui_2664 and Dsui_2665 are separated by 106 nucleotidesDsui_2665 and Dsui_2666 are separated by 144 nucleotidesDsui_2666 and Dsui_2667 are separated by 12 nucleotides Dsui_2662: Dsui_2662 - hypothetical protein, at 2,815,918 to 2,816,817 _2662 Dsui_2663: Dsui_2663 - hypothetical protein, at 2,816,839 to 2,817,024 _2663 Dsui_2664: Dsui_2664 - hypothetical protein, at 2,817,032 to 2,817,352 _2664 Dsui_2665: Dsui_2665 - putative nucleoside-diphosphate sugar epimerase, at 2,817,459 to 2,818,313 _2665 Dsui_2666: Dsui_2666 - putative transcriptional regulator, at 2,818,458 to 2,818,901 _2666 Dsui_2667: Dsui_2667 - acetyltransferase, at 2,818,914 to 2,819,447 _2667 Position (kb) 2817 2818 2819Strain fitness (log2 ratio) -1 0 1 2 3at 2816.479 kb on + strand, within Dsui_2662at 2816.498 kb on - strand, within Dsui_2662at 2816.508 kb on + strand, within Dsui_2662at 2816.512 kb on - strand, within Dsui_2662at 2816.589 kb on - strandat 2816.599 kb on - strandat 2816.606 kb on - strand, within Dsui_2662at 2816.642 kb on + strand, within Dsui_2662at 2816.643 kb on - strand, within Dsui_2662at 2816.738 kb on + strandat 2816.738 kb on + strandat 2816.779 kb on + strandat 2816.782 kb on - strandat 2816.787 kb on - strandat 2816.797 kb on - strandat 2816.830 kb on + strandat 2816.839 kb on - strandat 2816.929 kb on + strand, within Dsui_2663at 2816.962 kb on - strandat 2816.971 kb on - strand, within Dsui_2663at 2816.997 kb on + strand, within Dsui_2663at 2817.031 kb on - strandat 2817.045 kb on - strandat 2817.103 kb on + strandat 2817.123 kb on - strand, within Dsui_2664at 2817.167 kb on + strandat 2817.175 kb on - strand, within Dsui_2664at 2817.226 kb on - strand, within Dsui_2664at 2817.226 kb on - strand, within Dsui_2664at 2817.519 kb on + strandat 2817.655 kb on - strandat 2817.672 kb on - strandat 2817.708 kb on + strandat 2817.716 kb on - strandat 2817.868 kb on + strandat 2817.882 kb on + strandat 2817.922 kb on + strandat 2817.923 kb on + strand, within Dsui_2665at 2818.005 kb on + strandat 2818.013 kb on - strandat 2818.059 kb on - strandat 2818.093 kb on + strandat 2818.357 kb on - strandat 2818.378 kb on + strandat 2818.392 kb on - strandat 2818.447 kb on + strandat 2818.455 kb on + strandat 2818.471 kb on - strandat 2818.569 kb on - strand, within Dsui_2666at 2818.597 kb on - strand, within Dsui_2666at 2818.693 kb on - strand, within Dsui_2666at 2818.754 kb on - strand, within Dsui_2666at 2818.758 kb on + strand, within Dsui_2666at 2819.006 kb on - strandat 2819.118 kb on + strand, within Dsui_2667at 2819.274 kb on + strand, within Dsui_2667at 2819.274 kb on + strand, within Dsui_2667

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,816,479 + Dsui_2662 0.62 -0.2
2,816,498 - Dsui_2662 0.64 -0.3
2,816,508 + Dsui_2662 0.66 +1.0
2,816,512 - Dsui_2662 0.66 +0.6
2,816,589 - +1.2
2,816,599 - +2.2
2,816,606 - Dsui_2662 0.76 -0.8
2,816,642 + Dsui_2662 0.80 -0.4
2,816,643 - Dsui_2662 0.81 -0.1
2,816,738 + +0.7
2,816,738 + -0.0
2,816,779 + +0.7
2,816,782 - +0.6
2,816,787 - +0.2
2,816,797 - +1.2
2,816,830 + +0.5
2,816,839 - +2.2
2,816,929 + Dsui_2663 0.48 -0.3
2,816,962 - +0.4
2,816,971 - Dsui_2663 0.71 +0.0
2,816,997 + Dsui_2663 0.85 +0.4
2,817,031 - -0.6
2,817,045 - +0.8
2,817,103 + +0.6
2,817,123 - Dsui_2664 0.28 -0.0
2,817,167 + +2.2
2,817,175 - Dsui_2664 0.45 -0.1
2,817,226 - Dsui_2664 0.60 -0.1
2,817,226 - Dsui_2664 0.60 +1.0
2,817,519 + +1.2
2,817,655 - -0.4
2,817,672 - +0.2
2,817,708 + +1.2
2,817,716 - +1.2
2,817,868 + +3.7
2,817,882 + +1.2
2,817,922 + +1.2
2,817,923 + Dsui_2665 0.54 +1.6
2,818,005 + +1.2
2,818,013 - +0.6
2,818,059 - +2.2
2,818,093 + +1.2
2,818,357 - +2.2
2,818,378 + +1.2
2,818,392 - +0.8
2,818,447 + +0.2
2,818,455 + +0.1
2,818,471 - +1.2
2,818,569 - Dsui_2666 0.25 +0.6
2,818,597 - Dsui_2666 0.31 -1.2
2,818,693 - Dsui_2666 0.53 -0.9
2,818,754 - Dsui_2666 0.67 +1.7
2,818,758 + Dsui_2666 0.68 +0.3
2,819,006 - +1.2
2,819,118 + Dsui_2667 0.38 -0.2
2,819,274 + Dsui_2667 0.67 -0.1
2,819,274 + Dsui_2667 0.67 +0.4

Or see this region's nucleotide sequence