Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2662 and Dsui_2663 are separated by 21 nucleotides Dsui_2663 and Dsui_2664 are separated by 7 nucleotides Dsui_2664 and Dsui_2665 are separated by 106 nucleotides Dsui_2665 and Dsui_2666 are separated by 144 nucleotides Dsui_2666 and Dsui_2667 are separated by 12 nucleotides
Dsui_2662: Dsui_2662 - hypothetical protein, at 2,815,918 to 2,816,817
_2662
Dsui_2663: Dsui_2663 - hypothetical protein, at 2,816,839 to 2,817,024
_2663
Dsui_2664: Dsui_2664 - hypothetical protein, at 2,817,032 to 2,817,352
_2664
Dsui_2665: Dsui_2665 - putative nucleoside-diphosphate sugar epimerase, at 2,817,459 to 2,818,313
_2665
Dsui_2666: Dsui_2666 - putative transcriptional regulator, at 2,818,458 to 2,818,901
_2666
Dsui_2667: Dsui_2667 - acetyltransferase, at 2,818,914 to 2,819,447
_2667
Position (kb)
2817
2818
2819 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2816.479 kb on + strand, within Dsui_2662 at 2816.498 kb on - strand, within Dsui_2662 at 2816.508 kb on + strand, within Dsui_2662 at 2816.512 kb on - strand, within Dsui_2662 at 2816.589 kb on - strand at 2816.599 kb on - strand at 2816.606 kb on - strand, within Dsui_2662 at 2816.642 kb on + strand, within Dsui_2662 at 2816.643 kb on - strand, within Dsui_2662 at 2816.738 kb on + strand at 2816.738 kb on + strand at 2816.779 kb on + strand at 2816.782 kb on - strand at 2816.787 kb on - strand at 2816.797 kb on - strand at 2816.830 kb on + strand at 2816.839 kb on - strand at 2816.929 kb on + strand, within Dsui_2663 at 2816.962 kb on - strand at 2816.971 kb on - strand, within Dsui_2663 at 2816.997 kb on + strand, within Dsui_2663 at 2817.031 kb on - strand at 2817.045 kb on - strand at 2817.103 kb on + strand at 2817.123 kb on - strand, within Dsui_2664 at 2817.167 kb on + strand at 2817.175 kb on - strand, within Dsui_2664 at 2817.226 kb on - strand, within Dsui_2664 at 2817.226 kb on - strand, within Dsui_2664 at 2817.519 kb on + strand at 2817.655 kb on - strand at 2817.672 kb on - strand at 2817.708 kb on + strand at 2817.716 kb on - strand at 2817.868 kb on + strand at 2817.882 kb on + strand at 2817.922 kb on + strand at 2817.923 kb on + strand, within Dsui_2665 at 2818.005 kb on + strand at 2818.013 kb on - strand at 2818.059 kb on - strand at 2818.093 kb on + strand at 2818.357 kb on - strand at 2818.378 kb on + strand at 2818.392 kb on - strand at 2818.447 kb on + strand at 2818.455 kb on + strand at 2818.471 kb on - strand at 2818.569 kb on - strand, within Dsui_2666 at 2818.597 kb on - strand, within Dsui_2666 at 2818.693 kb on - strand, within Dsui_2666 at 2818.754 kb on - strand, within Dsui_2666 at 2818.758 kb on + strand, within Dsui_2666 at 2819.006 kb on - strand at 2819.118 kb on + strand, within Dsui_2667 at 2819.274 kb on + strand, within Dsui_2667 at 2819.274 kb on + strand, within Dsui_2667
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 2,816,479 + Dsui_2662 0.62 -0.2 2,816,498 - Dsui_2662 0.64 -0.3 2,816,508 + Dsui_2662 0.66 +1.0 2,816,512 - Dsui_2662 0.66 +0.6 2,816,589 - +1.2 2,816,599 - +2.2 2,816,606 - Dsui_2662 0.76 -0.8 2,816,642 + Dsui_2662 0.80 -0.4 2,816,643 - Dsui_2662 0.81 -0.1 2,816,738 + +0.7 2,816,738 + -0.0 2,816,779 + +0.7 2,816,782 - +0.6 2,816,787 - +0.2 2,816,797 - +1.2 2,816,830 + +0.5 2,816,839 - +2.2 2,816,929 + Dsui_2663 0.48 -0.3 2,816,962 - +0.4 2,816,971 - Dsui_2663 0.71 +0.0 2,816,997 + Dsui_2663 0.85 +0.4 2,817,031 - -0.6 2,817,045 - +0.8 2,817,103 + +0.6 2,817,123 - Dsui_2664 0.28 -0.0 2,817,167 + +2.2 2,817,175 - Dsui_2664 0.45 -0.1 2,817,226 - Dsui_2664 0.60 -0.1 2,817,226 - Dsui_2664 0.60 +1.0 2,817,519 + +1.2 2,817,655 - -0.4 2,817,672 - +0.2 2,817,708 + +1.2 2,817,716 - +1.2 2,817,868 + +3.7 2,817,882 + +1.2 2,817,922 + +1.2 2,817,923 + Dsui_2665 0.54 +1.6 2,818,005 + +1.2 2,818,013 - +0.6 2,818,059 - +2.2 2,818,093 + +1.2 2,818,357 - +2.2 2,818,378 + +1.2 2,818,392 - +0.8 2,818,447 + +0.2 2,818,455 + +0.1 2,818,471 - +1.2 2,818,569 - Dsui_2666 0.25 +0.6 2,818,597 - Dsui_2666 0.31 -1.2 2,818,693 - Dsui_2666 0.53 -0.9 2,818,754 - Dsui_2666 0.67 +1.7 2,818,758 + Dsui_2666 0.68 +0.3 2,819,006 - +1.2 2,819,118 + Dsui_2667 0.38 -0.2 2,819,274 + Dsui_2667 0.67 -0.1 2,819,274 + Dsui_2667 0.67 +0.4
Or see this region's nucleotide sequence