Strain Fitness in Dechlorosoma suillum PS around Dsui_2652

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2650 and Dsui_2651 are separated by 68 nucleotidesDsui_2651 and Dsui_2652 are separated by 16 nucleotidesDsui_2652 and Dsui_2653 are separated by 29 nucleotidesDsui_2653 and Dsui_2654 are separated by 16 nucleotides Dsui_2650: Dsui_2650 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 2,806,466 to 2,807,458 _2650 Dsui_2651: Dsui_2651 - ankyrin repeat-containing protein, at 2,807,527 to 2,808,171 _2651 Dsui_2652: Dsui_2652 - hydrolase, TatD family, at 2,808,188 to 2,808,970 _2652 Dsui_2653: Dsui_2653 - Tfp pilus assembly protein PilZ, at 2,809,000 to 2,809,386 _2653 Dsui_2654: Dsui_2654 - DNA polymerase III, delta'' subunit, at 2,809,403 to 2,810,428 _2654 Position (kb) 2808 2809Strain fitness (log2 ratio) -1 0 1 2 3at 2807.356 kb on - strand, within Dsui_2650at 2807.362 kb on - strandat 2807.425 kb on + strandat 2807.437 kb on + strandat 2807.468 kb on - strandat 2807.530 kb on + strandat 2807.530 kb on + strandat 2807.540 kb on + strandat 2807.604 kb on - strand, within Dsui_2651at 2807.619 kb on + strandat 2807.637 kb on - strandat 2807.933 kb on - strand, within Dsui_2651at 2808.088 kb on - strandat 2808.088 kb on - strand, within Dsui_2651at 2808.089 kb on - strandat 2808.152 kb on + strandat 2808.256 kb on + strandat 2808.265 kb on + strandat 2808.349 kb on + strand, within Dsui_2652at 2808.369 kb on + strandat 2808.493 kb on + strandat 2808.513 kb on - strand, within Dsui_2652at 2808.527 kb on + strand, within Dsui_2652at 2808.580 kb on + strandat 2808.580 kb on + strandat 2808.617 kb on - strand, within Dsui_2652at 2808.622 kb on - strand, within Dsui_2652at 2808.624 kb on + strand, within Dsui_2652at 2808.765 kb on + strand, within Dsui_2652at 2808.773 kb on - strand, within Dsui_2652at 2808.795 kb on - strand, within Dsui_2652at 2808.815 kb on + strandat 2808.816 kb on + strandat 2808.835 kb on - strand, within Dsui_2652at 2808.855 kb on - strand, within Dsui_2652at 2808.941 kb on + strandat 2809.037 kb on - strandat 2809.063 kb on - strand, within Dsui_2653at 2809.108 kb on + strand, within Dsui_2653at 2809.123 kb on - strand, within Dsui_2653at 2809.131 kb on - strand, within Dsui_2653at 2809.188 kb on + strandat 2809.196 kb on - strand, within Dsui_2653at 2809.390 kb on - strandat 2809.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,807,356 - Dsui_2650 0.90 -0.4
2,807,362 - -0.1
2,807,425 + +1.4
2,807,437 + +2.2
2,807,468 - +0.2
2,807,530 + +0.9
2,807,530 + -0.4
2,807,540 + +0.2
2,807,604 - Dsui_2651 0.12 +1.0
2,807,619 + +2.2
2,807,637 - +1.2
2,807,933 - Dsui_2651 0.63 +1.2
2,808,088 - +1.2
2,808,088 - Dsui_2651 0.87 -0.6
2,808,089 - +1.2
2,808,152 + +2.2
2,808,256 + +1.2
2,808,265 + +0.8
2,808,349 + Dsui_2652 0.21 -0.5
2,808,369 + +1.4
2,808,493 + +0.3
2,808,513 - Dsui_2652 0.42 +0.6
2,808,527 + Dsui_2652 0.43 +1.3
2,808,580 + +2.2
2,808,580 + -0.2
2,808,617 - Dsui_2652 0.55 +0.4
2,808,622 - Dsui_2652 0.55 +0.5
2,808,624 + Dsui_2652 0.56 +0.7
2,808,765 + Dsui_2652 0.74 +0.7
2,808,773 - Dsui_2652 0.75 +1.4
2,808,795 - Dsui_2652 0.78 -0.3
2,808,815 + +1.2
2,808,816 + +2.2
2,808,835 - Dsui_2652 0.83 +0.5
2,808,855 - Dsui_2652 0.85 +0.9
2,808,941 + +1.2
2,809,037 - +0.2
2,809,063 - Dsui_2653 0.16 +0.7
2,809,108 + Dsui_2653 0.28 +0.4
2,809,123 - Dsui_2653 0.32 +0.6
2,809,131 - Dsui_2653 0.34 +0.0
2,809,188 + +3.2
2,809,196 - Dsui_2653 0.51 +0.2
2,809,390 - +0.3
2,809,409 - +0.1

Or see this region's nucleotide sequence