Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2650 and Dsui_2651 are separated by 68 nucleotides Dsui_2651 and Dsui_2652 are separated by 16 nucleotides Dsui_2652 and Dsui_2653 are separated by 29 nucleotides Dsui_2653 and Dsui_2654 are separated by 16 nucleotides
Dsui_2650: Dsui_2650 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 2,806,466 to 2,807,458
_2650
Dsui_2651: Dsui_2651 - ankyrin repeat-containing protein, at 2,807,527 to 2,808,171
_2651
Dsui_2652: Dsui_2652 - hydrolase, TatD family, at 2,808,188 to 2,808,970
_2652
Dsui_2653: Dsui_2653 - Tfp pilus assembly protein PilZ, at 2,809,000 to 2,809,386
_2653
Dsui_2654: Dsui_2654 - DNA polymerase III, delta'' subunit, at 2,809,403 to 2,810,428
_2654
Position (kb)
2808
2809 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2807.356 kb on - strand, within Dsui_2650 at 2807.362 kb on - strand at 2807.425 kb on + strand at 2807.437 kb on + strand at 2807.468 kb on - strand at 2807.530 kb on + strand at 2807.530 kb on + strand at 2807.540 kb on + strand at 2807.604 kb on - strand, within Dsui_2651 at 2807.619 kb on + strand at 2807.637 kb on - strand at 2807.933 kb on - strand, within Dsui_2651 at 2808.088 kb on - strand at 2808.088 kb on - strand, within Dsui_2651 at 2808.089 kb on - strand at 2808.152 kb on + strand at 2808.256 kb on + strand at 2808.265 kb on + strand at 2808.349 kb on + strand, within Dsui_2652 at 2808.369 kb on + strand at 2808.493 kb on + strand at 2808.513 kb on - strand, within Dsui_2652 at 2808.527 kb on + strand, within Dsui_2652 at 2808.580 kb on + strand at 2808.580 kb on + strand at 2808.617 kb on - strand, within Dsui_2652 at 2808.622 kb on - strand, within Dsui_2652 at 2808.624 kb on + strand, within Dsui_2652 at 2808.765 kb on + strand, within Dsui_2652 at 2808.773 kb on - strand, within Dsui_2652 at 2808.795 kb on - strand, within Dsui_2652 at 2808.815 kb on + strand at 2808.816 kb on + strand at 2808.835 kb on - strand, within Dsui_2652 at 2808.855 kb on - strand, within Dsui_2652 at 2808.941 kb on + strand at 2809.037 kb on - strand at 2809.063 kb on - strand, within Dsui_2653 at 2809.108 kb on + strand, within Dsui_2653 at 2809.123 kb on - strand, within Dsui_2653 at 2809.131 kb on - strand, within Dsui_2653 at 2809.188 kb on + strand at 2809.196 kb on - strand, within Dsui_2653 at 2809.390 kb on - strand at 2809.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 2,807,356 - Dsui_2650 0.90 -0.4 2,807,362 - -0.1 2,807,425 + +1.4 2,807,437 + +2.2 2,807,468 - +0.2 2,807,530 + +0.9 2,807,530 + -0.4 2,807,540 + +0.2 2,807,604 - Dsui_2651 0.12 +1.0 2,807,619 + +2.2 2,807,637 - +1.2 2,807,933 - Dsui_2651 0.63 +1.2 2,808,088 - +1.2 2,808,088 - Dsui_2651 0.87 -0.6 2,808,089 - +1.2 2,808,152 + +2.2 2,808,256 + +1.2 2,808,265 + +0.8 2,808,349 + Dsui_2652 0.21 -0.5 2,808,369 + +1.4 2,808,493 + +0.3 2,808,513 - Dsui_2652 0.42 +0.6 2,808,527 + Dsui_2652 0.43 +1.3 2,808,580 + +2.2 2,808,580 + -0.2 2,808,617 - Dsui_2652 0.55 +0.4 2,808,622 - Dsui_2652 0.55 +0.5 2,808,624 + Dsui_2652 0.56 +0.7 2,808,765 + Dsui_2652 0.74 +0.7 2,808,773 - Dsui_2652 0.75 +1.4 2,808,795 - Dsui_2652 0.78 -0.3 2,808,815 + +1.2 2,808,816 + +2.2 2,808,835 - Dsui_2652 0.83 +0.5 2,808,855 - Dsui_2652 0.85 +0.9 2,808,941 + +1.2 2,809,037 - +0.2 2,809,063 - Dsui_2653 0.16 +0.7 2,809,108 + Dsui_2653 0.28 +0.4 2,809,123 - Dsui_2653 0.32 +0.6 2,809,131 - Dsui_2653 0.34 +0.0 2,809,188 + +3.2 2,809,196 - Dsui_2653 0.51 +0.2 2,809,390 - +0.3 2,809,409 - +0.1
Or see this region's nucleotide sequence