Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2615 and Dsui_2616 overlap by 10 nucleotides Dsui_2616 and Dsui_2617 are separated by 477 nucleotides Dsui_2617 and Dsui_2618 are separated by 18 nucleotides Dsui_2618 and Dsui_2619 are separated by 40 nucleotides Dsui_2619 and Dsui_2620 are separated by 4 nucleotides
Dsui_2615: Dsui_2615 - hypothetical protein, at 2,768,053 to 2,769,579
_2615
Dsui_2616: Dsui_2616 - hypothetical protein, at 2,769,570 to 2,769,788
_2616
Dsui_2617: Dsui_2617 - DNA recombination-dependent growth factor C, at 2,770,266 to 2,771,168
_2617
Dsui_2618: Dsui_2618 - putative transcriptional regulator, at 2,771,187 to 2,771,405
_2618
Dsui_2619: Dsui_2619 - hypothetical protein, at 2,771,446 to 2,771,676
_2619
Dsui_2620: Dsui_2620 - hypothetical protein, at 2,771,681 to 2,773,621
_2620
Position (kb)
2770
2771
2772 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2769.418 kb on + strand at 2769.428 kb on + strand at 2769.428 kb on + strand at 2769.428 kb on + strand at 2769.428 kb on + strand at 2769.428 kb on + strand at 2769.436 kb on - strand at 2769.436 kb on - strand at 2769.443 kb on + strand at 2769.473 kb on - strand at 2769.533 kb on + strand at 2769.533 kb on + strand at 2769.533 kb on + strand at 2769.541 kb on - strand at 2769.541 kb on - strand at 2769.552 kb on + strand at 2769.552 kb on + strand at 2769.652 kb on + strand, within Dsui_2616 at 2769.667 kb on + strand, within Dsui_2616 at 2769.701 kb on + strand, within Dsui_2616 at 2769.763 kb on - strand, within Dsui_2616 at 2769.796 kb on - strand at 2769.933 kb on + strand at 2769.983 kb on - strand at 2770.000 kb on - strand at 2770.116 kb on - strand at 2770.142 kb on + strand at 2770.161 kb on + strand at 2770.206 kb on + strand at 2770.260 kb on - strand at 2770.272 kb on - strand at 2770.340 kb on - strand at 2770.520 kb on + strand, within Dsui_2617 at 2771.592 kb on + strand, within Dsui_2619 at 2771.730 kb on + strand at 2771.730 kb on + strand at 2771.735 kb on + strand at 2771.790 kb on - strand at 2771.803 kb on + strand at 2771.906 kb on - strand, within Dsui_2620 at 2772.105 kb on - strand, within Dsui_2620
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 2,769,418 + +1.1 2,769,428 + -1.0 2,769,428 + -0.8 2,769,428 + -1.2 2,769,428 + -0.9 2,769,428 + +1.1 2,769,436 - +0.4 2,769,436 - -0.7 2,769,443 + -1.3 2,769,473 - -0.7 2,769,533 + +0.1 2,769,533 + +0.6 2,769,533 + +0.1 2,769,541 - +2.1 2,769,541 - +0.8 2,769,552 + +0.6 2,769,552 + +0.2 2,769,652 + Dsui_2616 0.37 -0.7 2,769,667 + Dsui_2616 0.44 -0.4 2,769,701 + Dsui_2616 0.60 +0.3 2,769,763 - Dsui_2616 0.88 +0.0 2,769,796 - -1.3 2,769,933 + -0.6 2,769,983 - -1.1 2,770,000 - -0.5 2,770,116 - +0.7 2,770,142 + -1.0 2,770,161 + -0.1 2,770,206 + -1.9 2,770,260 - +2.5 2,770,272 - -0.9 2,770,340 - -0.7 2,770,520 + Dsui_2617 0.28 -1.4 2,771,592 + Dsui_2619 0.63 +1.4 2,771,730 + -1.0 2,771,730 + +0.1 2,771,735 + +0.1 2,771,790 - -0.5 2,771,803 + +1.3 2,771,906 - Dsui_2620 0.12 +0.1 2,772,105 - Dsui_2620 0.22 -1.3
Or see this region's nucleotide sequence