Strain Fitness in Dechlorosoma suillum PS around Dsui_2614

Experiment: rich media with sodium chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2613 and Dsui_2614 are separated by 48 nucleotidesDsui_2614 and Dsui_2615 overlap by 4 nucleotides Dsui_2613: Dsui_2613 - integrating conjugative element protein, PFL_4669 family, at 2,766,194 to 2,767,207 _2613 Dsui_2614: Dsui_2614 - hypothetical protein, at 2,767,256 to 2,768,056 _2614 Dsui_2615: Dsui_2615 - hypothetical protein, at 2,768,053 to 2,769,579 _2615 Position (kb) 2767 2768 2769Strain fitness (log2 ratio) -2 -1 0 1at 2766.276 kb on + strandat 2766.415 kb on + strand, within Dsui_2613at 2766.423 kb on - strand, within Dsui_2613at 2766.423 kb on - strand, within Dsui_2613at 2766.423 kb on - strand, within Dsui_2613at 2766.512 kb on + strandat 2766.519 kb on - strand, within Dsui_2613at 2766.563 kb on - strand, within Dsui_2613at 2766.691 kb on - strand, within Dsui_2613at 2766.734 kb on - strand, within Dsui_2613at 2766.797 kb on - strand, within Dsui_2613at 2766.803 kb on - strand, within Dsui_2613at 2766.927 kb on + strand, within Dsui_2613at 2767.067 kb on + strandat 2767.144 kb on + strandat 2767.262 kb on - strandat 2767.597 kb on + strand, within Dsui_2614at 2767.597 kb on + strand, within Dsui_2614at 2767.606 kb on - strand, within Dsui_2614at 2767.716 kb on + strand, within Dsui_2614at 2767.764 kb on - strand, within Dsui_2614at 2767.948 kb on - strand, within Dsui_2614at 2767.985 kb on + strandat 2768.093 kb on + strandat 2768.185 kb on - strandat 2768.187 kb on + strandat 2768.240 kb on + strand, within Dsui_2615at 2768.247 kb on - strand, within Dsui_2615at 2768.247 kb on - strand, within Dsui_2615at 2768.300 kb on + strandat 2768.467 kb on + strand, within Dsui_2615at 2768.516 kb on + strand, within Dsui_2615at 2768.546 kb on + strand, within Dsui_2615at 2768.570 kb on + strand, within Dsui_2615at 2768.570 kb on + strand, within Dsui_2615at 2768.586 kb on + strand, within Dsui_2615at 2768.603 kb on + strand, within Dsui_2615at 2768.661 kb on + strand, within Dsui_2615at 2768.674 kb on - strand, within Dsui_2615at 2768.725 kb on + strand, within Dsui_2615at 2768.733 kb on - strand, within Dsui_2615at 2768.751 kb on + strand, within Dsui_2615at 2768.751 kb on + strand, within Dsui_2615at 2768.751 kb on + strand, within Dsui_2615at 2768.824 kb on - strandat 2769.022 kb on - strand, within Dsui_2615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
remove
2,766,276 + +0.1
2,766,415 + Dsui_2613 0.22 +0.8
2,766,423 - Dsui_2613 0.23 -0.6
2,766,423 - Dsui_2613 0.23 +0.2
2,766,423 - Dsui_2613 0.23 +0.1
2,766,512 + +0.1
2,766,519 - Dsui_2613 0.32 -0.3
2,766,563 - Dsui_2613 0.36 -0.7
2,766,691 - Dsui_2613 0.49 +0.7
2,766,734 - Dsui_2613 0.53 -0.7
2,766,797 - Dsui_2613 0.59 -0.9
2,766,803 - Dsui_2613 0.60 -1.5
2,766,927 + Dsui_2613 0.72 +0.1
2,767,067 + -0.9
2,767,144 + -2.4
2,767,262 - +0.1
2,767,597 + Dsui_2614 0.43 +0.1
2,767,597 + Dsui_2614 0.43 +0.1
2,767,606 - Dsui_2614 0.44 -0.8
2,767,716 + Dsui_2614 0.57 -1.0
2,767,764 - Dsui_2614 0.63 -0.8
2,767,948 - Dsui_2614 0.86 -1.6
2,767,985 + +0.6
2,768,093 + -0.4
2,768,185 - -0.5
2,768,187 + -0.7
2,768,240 + Dsui_2615 0.12 -0.1
2,768,247 - Dsui_2615 0.13 +0.6
2,768,247 - Dsui_2615 0.13 -0.3
2,768,300 + +1.1
2,768,467 + Dsui_2615 0.27 +1.0
2,768,516 + Dsui_2615 0.30 -0.0
2,768,546 + Dsui_2615 0.32 -0.7
2,768,570 + Dsui_2615 0.34 -1.4
2,768,570 + Dsui_2615 0.34 -1.4
2,768,586 + Dsui_2615 0.35 -1.0
2,768,603 + Dsui_2615 0.36 -0.3
2,768,661 + Dsui_2615 0.40 -0.7
2,768,674 - Dsui_2615 0.41 -0.4
2,768,725 + Dsui_2615 0.44 -0.2
2,768,733 - Dsui_2615 0.45 -1.4
2,768,751 + Dsui_2615 0.46 -0.0
2,768,751 + Dsui_2615 0.46 -0.9
2,768,751 + Dsui_2615 0.46 -0.6
2,768,824 - -0.4
2,769,022 - Dsui_2615 0.63 -0.9

Or see this region's nucleotide sequence