Strain Fitness in Dechlorosoma suillum PS around Dsui_2517

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2516 and Dsui_2517 overlap by 23 nucleotidesDsui_2517 and Dsui_2518 are separated by 119 nucleotidesDsui_2518 and Dsui_2519 are separated by 45 nucleotides Dsui_2516: Dsui_2516 - putative membrane protein, at 2,666,727 to 2,667,992 _2516 Dsui_2517: Dsui_2517 - transposase, at 2,667,970 to 2,668,926 _2517 Dsui_2518: Dsui_2518 - hypothetical protein, at 2,669,046 to 2,669,519 _2518 Dsui_2519: Dsui_2519 - methyl-accepting chemotaxis protein, at 2,669,565 to 2,671,214 _2519 Position (kb) 2667 2668 2669Strain fitness (log2 ratio) -1 0 1 2at 2667.184 kb on + strandat 2667.252 kb on - strand, within Dsui_2516at 2667.319 kb on + strand, within Dsui_2516at 2667.326 kb on - strand, within Dsui_2516at 2667.326 kb on - strand, within Dsui_2516at 2667.326 kb on - strand, within Dsui_2516at 2667.355 kb on - strand, within Dsui_2516at 2667.369 kb on + strand, within Dsui_2516at 2667.380 kb on + strand, within Dsui_2516at 2667.512 kb on - strandat 2667.719 kb on + strand, within Dsui_2516at 2669.130 kb on + strand, within Dsui_2518at 2669.156 kb on + strand, within Dsui_2518at 2669.220 kb on - strand, within Dsui_2518at 2669.234 kb on - strand, within Dsui_2518at 2669.258 kb on + strandat 2669.386 kb on - strand, within Dsui_2518at 2669.403 kb on + strand, within Dsui_2518at 2669.692 kb on - strandat 2669.806 kb on + strandat 2669.893 kb on + strand, within Dsui_2519at 2669.901 kb on - strand, within Dsui_2519

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,667,184 + +2.1
2,667,252 - Dsui_2516 0.41 -0.2
2,667,319 + Dsui_2516 0.47 +0.8
2,667,326 - Dsui_2516 0.47 +0.4
2,667,326 - Dsui_2516 0.47 -0.2
2,667,326 - Dsui_2516 0.47 +0.5
2,667,355 - Dsui_2516 0.50 +0.7
2,667,369 + Dsui_2516 0.51 -0.5
2,667,380 + Dsui_2516 0.52 +0.8
2,667,512 - +0.3
2,667,719 + Dsui_2516 0.78 -1.3
2,669,130 + Dsui_2518 0.18 -0.2
2,669,156 + Dsui_2518 0.23 +0.3
2,669,220 - Dsui_2518 0.37 +0.2
2,669,234 - Dsui_2518 0.40 -0.1
2,669,258 + -0.7
2,669,386 - Dsui_2518 0.72 +0.3
2,669,403 + Dsui_2518 0.75 -0.5
2,669,692 - +0.0
2,669,806 + +2.1
2,669,893 + Dsui_2519 0.20 +0.5
2,669,901 - Dsui_2519 0.20 -1.4

Or see this region's nucleotide sequence