Strain Fitness in Dechlorosoma suillum PS around Dsui_2475

Experiment: rich media with sodium chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2470 and Dsui_2471 are separated by 0 nucleotidesDsui_2471 and Dsui_2472 are separated by 81 nucleotidesDsui_2472 and Dsui_2473 are separated by 52 nucleotidesDsui_2473 and Dsui_2474 are separated by 16 nucleotidesDsui_2474 and Dsui_2475 are separated by 48 nucleotidesDsui_2475 and Dsui_2476 are separated by 138 nucleotidesDsui_2476 and Dsui_2477 are separated by 70 nucleotidesDsui_2477 and Dsui_2478 are separated by 17 nucleotidesDsui_2478 and Dsui_2479 overlap by 4 nucleotides Dsui_2470: Dsui_2470 - excinuclease ABC, C subunit, at 2,626,359 to 2,628,209 _2470 Dsui_2471: Dsui_2471 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,628,210 to 2,628,785 _2471 Dsui_2472: Dsui_2472 - tRNA-Gly, at 2,628,867 to 2,628,942 _2472 Dsui_2473: Dsui_2473 - tRNA-Cys, at 2,628,995 to 2,629,068 _2473 Dsui_2474: Dsui_2474 - tRNA-Gly, at 2,629,085 to 2,629,160 _2474 Dsui_2475: Dsui_2475 - tRNA-Gly, at 2,629,209 to 2,629,284 _2475 Dsui_2476: Dsui_2476 - hypothetical protein, at 2,629,423 to 2,629,626 _2476 Dsui_2477: Dsui_2477 - tRNA-Leu, at 2,629,697 to 2,629,781 _2477 Dsui_2478: Dsui_2478 - hypothetical protein, at 2,629,799 to 2,630,239 _2478 Dsui_2479: Dsui_2479 - hypothetical protein, at 2,630,236 to 2,630,511 _2479 Position (kb) 2629 2630Strain fitness (log2 ratio) -1 0 1at 2628.799 kb on + strandat 2628.800 kb on + strandat 2628.802 kb on - strandat 2628.807 kb on - strandat 2629.161 kb on + strandat 2629.175 kb on + strandat 2629.328 kb on + strandat 2629.394 kb on - strandat 2629.490 kb on + strand, within Dsui_2476at 2629.653 kb on + strandat 2629.779 kb on + strandat 2629.814 kb on - strandat 2629.818 kb on + strandat 2629.852 kb on - strand, within Dsui_2478at 2629.888 kb on - strand, within Dsui_2478at 2629.902 kb on - strand, within Dsui_2478at 2629.907 kb on - strand, within Dsui_2478at 2629.944 kb on + strand, within Dsui_2478at 2629.955 kb on + strand, within Dsui_2478at 2630.021 kb on - strand, within Dsui_2478at 2630.228 kb on + strandat 2630.253 kb on + strandat 2630.267 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
remove
2,628,799 + +0.3
2,628,800 + -0.0
2,628,802 - +0.0
2,628,807 - +0.8
2,629,161 + +0.0
2,629,175 + +0.0
2,629,328 + +1.1
2,629,394 - -0.1
2,629,490 + Dsui_2476 0.33 +0.9
2,629,653 + +0.6
2,629,779 + -0.0
2,629,814 - -0.1
2,629,818 + +0.3
2,629,852 - Dsui_2478 0.12 -0.6
2,629,888 - Dsui_2478 0.20 -0.2
2,629,902 - Dsui_2478 0.23 -0.2
2,629,907 - Dsui_2478 0.24 +0.5
2,629,944 + Dsui_2478 0.33 +0.6
2,629,955 + Dsui_2478 0.35 -0.1
2,630,021 - Dsui_2478 0.50 -0.4
2,630,228 + +0.2
2,630,253 + +1.3
2,630,267 - +1.5

Or see this region's nucleotide sequence