Strain Fitness in Dechlorosoma suillum PS around Dsui_2399

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2398 and Dsui_2399 are separated by 62 nucleotidesDsui_2399 and Dsui_2400 are separated by 4 nucleotides Dsui_2398: Dsui_2398 - hypothetical protein, at 2,550,806 to 2,551,801 _2398 Dsui_2399: Dsui_2399 - membrane-associated phospholipid phosphatase, at 2,551,864 to 2,552,514 _2399 Dsui_2400: Dsui_2400 - signal transduction histidine kinase, at 2,552,519 to 2,553,847 _2400 Position (kb) 2551 2552 2553Strain fitness (log2 ratio) -1 0 1 2at 2550.978 kb on + strandat 2550.986 kb on - strand, within Dsui_2398at 2551.000 kb on - strand, within Dsui_2398at 2551.000 kb on - strandat 2551.104 kb on - strand, within Dsui_2398at 2551.114 kb on - strand, within Dsui_2398at 2551.136 kb on - strand, within Dsui_2398at 2551.225 kb on - strand, within Dsui_2398at 2551.226 kb on - strandat 2551.285 kb on + strandat 2551.510 kb on - strandat 2551.544 kb on + strandat 2551.634 kb on + strand, within Dsui_2398at 2551.704 kb on + strandat 2551.941 kb on - strandat 2552.101 kb on - strand, within Dsui_2399at 2552.124 kb on - strandat 2552.160 kb on - strandat 2552.170 kb on - strandat 2552.174 kb on + strandat 2552.316 kb on - strand, within Dsui_2399at 2552.629 kb on + strandat 2552.632 kb on - strandat 2552.714 kb on - strand, within Dsui_2400at 2553.100 kb on - strand, within Dsui_2400at 2553.186 kb on + strandat 2553.220 kb on - strand, within Dsui_2400at 2553.322 kb on + strand, within Dsui_2400at 2553.330 kb on - strand, within Dsui_2400at 2553.373 kb on - strand, within Dsui_2400at 2553.380 kb on - strand, within Dsui_2400at 2553.485 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,550,978 + +1.0
2,550,986 - Dsui_2398 0.18 +0.7
2,551,000 - Dsui_2398 0.19 +0.4
2,551,000 - +0.4
2,551,104 - Dsui_2398 0.30 -0.7
2,551,114 - Dsui_2398 0.31 +0.7
2,551,136 - Dsui_2398 0.33 +0.8
2,551,225 - Dsui_2398 0.42 +0.6
2,551,226 - +0.7
2,551,285 + +1.0
2,551,510 - -0.3
2,551,544 + +0.4
2,551,634 + Dsui_2398 0.83 +0.6
2,551,704 + -0.9
2,551,941 - +0.0
2,552,101 - Dsui_2399 0.36 +0.4
2,552,124 - -1.0
2,552,160 - +0.7
2,552,170 - +0.0
2,552,174 + +1.0
2,552,316 - Dsui_2399 0.69 -1.2
2,552,629 + +1.0
2,552,632 - +2.0
2,552,714 - Dsui_2400 0.15 -0.4
2,553,100 - Dsui_2400 0.44 -0.7
2,553,186 + +2.0
2,553,220 - Dsui_2400 0.53 +1.0
2,553,322 + Dsui_2400 0.60 +1.7
2,553,330 - Dsui_2400 0.61 -0.7
2,553,373 - Dsui_2400 0.64 -0.6
2,553,380 - Dsui_2400 0.65 +1.1
2,553,485 + +2.0

Or see this region's nucleotide sequence