Strain Fitness in Dechlorosoma suillum PS around Dsui_2354

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2353 and Dsui_2354 are separated by 121 nucleotidesDsui_2354 and Dsui_2355 are separated by 14 nucleotidesDsui_2355 and Dsui_2356 are separated by 50 nucleotides Dsui_2353: Dsui_2353 - transcriptional regulator, at 2,505,075 to 2,505,974 _2353 Dsui_2354: Dsui_2354 - hypothetical protein, at 2,506,096 to 2,506,941 _2354 Dsui_2355: Dsui_2355 - cytochrome B561, at 2,506,956 to 2,507,495 _2355 Dsui_2356: Dsui_2356 - hypothetical protein, at 2,507,546 to 2,508,124 _2356 Position (kb) 2506 2507Strain fitness (log2 ratio) -1 0 1 2 3at 2505.335 kb on + strandat 2505.368 kb on + strand, within Dsui_2353at 2505.368 kb on + strand, within Dsui_2353at 2505.368 kb on + strand, within Dsui_2353at 2505.376 kb on - strand, within Dsui_2353at 2505.404 kb on - strand, within Dsui_2353at 2505.435 kb on + strandat 2505.468 kb on + strandat 2505.470 kb on - strand, within Dsui_2353at 2505.483 kb on - strand, within Dsui_2353at 2505.506 kb on - strand, within Dsui_2353at 2505.565 kb on + strand, within Dsui_2353at 2505.610 kb on - strand, within Dsui_2353at 2505.610 kb on - strand, within Dsui_2353at 2505.688 kb on + strand, within Dsui_2353at 2505.696 kb on - strand, within Dsui_2353at 2505.696 kb on - strand, within Dsui_2353at 2505.704 kb on + strandat 2505.715 kb on + strand, within Dsui_2353at 2505.730 kb on - strand, within Dsui_2353at 2505.884 kb on + strand, within Dsui_2353at 2505.892 kb on - strandat 2505.930 kb on + strandat 2505.994 kb on - strandat 2506.103 kb on + strandat 2506.244 kb on + strandat 2506.263 kb on + strandat 2506.280 kb on + strandat 2506.457 kb on - strandat 2506.485 kb on + strandat 2506.638 kb on - strandat 2506.735 kb on + strandat 2506.799 kb on - strandat 2506.861 kb on - strandat 2506.982 kb on - strandat 2506.995 kb on + strandat 2506.995 kb on + strandat 2507.014 kb on + strand, within Dsui_2355at 2507.121 kb on - strand, within Dsui_2355at 2507.282 kb on + strand, within Dsui_2355at 2507.282 kb on + strand, within Dsui_2355at 2507.318 kb on + strand, within Dsui_2355at 2507.349 kb on + strandat 2507.363 kb on + strand, within Dsui_2355at 2507.371 kb on - strandat 2507.489 kb on + strandat 2507.522 kb on + strandat 2507.528 kb on - strandat 2507.617 kb on + strandat 2507.861 kb on + strandat 2507.909 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,505,335 + +0.2
2,505,368 + Dsui_2353 0.33 +0.4
2,505,368 + Dsui_2353 0.33 +0.3
2,505,368 + Dsui_2353 0.33 -0.4
2,505,376 - Dsui_2353 0.33 +0.5
2,505,404 - Dsui_2353 0.37 -0.4
2,505,435 + +0.2
2,505,468 + +1.0
2,505,470 - Dsui_2353 0.44 +0.2
2,505,483 - Dsui_2353 0.45 +0.1
2,505,506 - Dsui_2353 0.48 +0.0
2,505,565 + Dsui_2353 0.54 -0.6
2,505,610 - Dsui_2353 0.59 +0.1
2,505,610 - Dsui_2353 0.59 -0.3
2,505,688 + Dsui_2353 0.68 +0.1
2,505,696 - Dsui_2353 0.69 -0.2
2,505,696 - Dsui_2353 0.69 +0.8
2,505,704 + +1.0
2,505,715 + Dsui_2353 0.71 +0.2
2,505,730 - Dsui_2353 0.73 +0.1
2,505,884 + Dsui_2353 0.90 -0.6
2,505,892 - +0.1
2,505,930 + +2.0
2,505,994 - -0.0
2,506,103 + +1.0
2,506,244 + +0.4
2,506,263 + -0.0
2,506,280 + +2.0
2,506,457 - -0.3
2,506,485 + +1.0
2,506,638 - -0.0
2,506,735 + +1.0
2,506,799 - +2.0
2,506,861 - +2.0
2,506,982 - +2.0
2,506,995 + -0.8
2,506,995 + +0.4
2,507,014 + Dsui_2355 0.11 +0.1
2,507,121 - Dsui_2355 0.31 +0.4
2,507,282 + Dsui_2355 0.60 -1.0
2,507,282 + Dsui_2355 0.60 -0.9
2,507,318 + Dsui_2355 0.67 -0.3
2,507,349 + +2.0
2,507,363 + Dsui_2355 0.75 -1.0
2,507,371 - +1.0
2,507,489 + -0.8
2,507,522 + +2.0
2,507,528 - +3.0
2,507,617 + +1.0
2,507,861 + -0.3
2,507,909 + +0.6

Or see this region's nucleotide sequence