Strain Fitness in Dechlorosoma suillum PS around Dsui_2292

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2290 and Dsui_2291 overlap by 4 nucleotidesDsui_2291 and Dsui_2292 are separated by 37 nucleotidesDsui_2292 and Dsui_2293 are separated by 156 nucleotides Dsui_2290: Dsui_2290 - putative paraquat-inducible protein A, at 2,444,968 to 2,445,633 _2290 Dsui_2291: Dsui_2291 - putative paraquat-inducible protein A, at 2,445,630 to 2,446,265 _2291 Dsui_2292: Dsui_2292 - RRM domain-containing RNA-binding protein, at 2,446,303 to 2,446,542 _2292 Dsui_2293: Dsui_2293 - poly(3-hydroxyalkanoate) synthetase, at 2,446,699 to 2,448,483 _2293 Position (kb) 2446 2447Strain fitness (log2 ratio) -1 0 1 2 3at 2445.323 kb on - strand, within Dsui_2290at 2445.356 kb on - strandat 2445.829 kb on - strand, within Dsui_2291at 2445.923 kb on - strand, within Dsui_2291at 2445.975 kb on + strandat 2446.076 kb on + strandat 2446.077 kb on - strandat 2446.094 kb on + strand, within Dsui_2291at 2446.158 kb on - strand, within Dsui_2291at 2446.158 kb on - strand, within Dsui_2291at 2446.158 kb on - strandat 2446.296 kb on - strandat 2446.518 kb on + strandat 2446.584 kb on - strandat 2446.739 kb on + strandat 2446.870 kb on + strandat 2446.879 kb on - strandat 2446.971 kb on - strandat 2447.024 kb on + strand, within Dsui_2293at 2447.025 kb on - strandat 2447.182 kb on + strandat 2447.276 kb on - strand, within Dsui_2293at 2447.294 kb on - strand, within Dsui_2293at 2447.432 kb on - strand, within Dsui_2293at 2447.508 kb on - strand, within Dsui_2293

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,445,323 - Dsui_2290 0.53 -0.0
2,445,356 - +2.6
2,445,829 - Dsui_2291 0.31 +1.0
2,445,923 - Dsui_2291 0.46 +0.1
2,445,975 + +2.0
2,446,076 + +1.0
2,446,077 - +1.0
2,446,094 + Dsui_2291 0.73 -1.2
2,446,158 - Dsui_2291 0.83 +0.8
2,446,158 - Dsui_2291 0.83 -0.0
2,446,158 - +1.0
2,446,296 - -0.2
2,446,518 + +3.0
2,446,584 - +0.7
2,446,739 + +2.0
2,446,870 + +0.7
2,446,879 - +3.0
2,446,971 - -0.0
2,447,024 + Dsui_2293 0.18 -0.5
2,447,025 - +0.2
2,447,182 + +0.4
2,447,276 - Dsui_2293 0.32 +0.4
2,447,294 - Dsui_2293 0.33 +0.3
2,447,432 - Dsui_2293 0.41 +0.6
2,447,508 - Dsui_2293 0.45 +1.0

Or see this region's nucleotide sequence