Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2204 and Dsui_2205 are separated by 190 nucleotides Dsui_2205 and Dsui_2206 are separated by 177 nucleotides Dsui_2206 and Dsui_2207 are separated by 37 nucleotides
Dsui_2204: Dsui_2204 - ABC-type dipeptide transport system, periplasmic component, at 2,340,115 to 2,342,286
_2204
Dsui_2205: Dsui_2205 - aconitate hydratase 2, at 2,342,477 to 2,345,074
_2205
Dsui_2206: Dsui_2206 - putative rRNA methylase SpoU family, at 2,345,252 to 2,345,800
_2206
Dsui_2207: Dsui_2207 - uncharacterized protein involved in response to NO, at 2,345,838 to 2,346,998
_2207
Position (kb)
2342
2343
2344
2345
2346 Strain fitness (log2 ratio)
-1
0
1 at 2341.549 kb on + strand, within Dsui_2204 at 2341.557 kb on - strand at 2341.578 kb on + strand, within Dsui_2204 at 2341.636 kb on + strand, within Dsui_2204 at 2341.641 kb on + strand, within Dsui_2204 at 2341.657 kb on - strand, within Dsui_2204 at 2341.703 kb on + strand, within Dsui_2204 at 2341.797 kb on + strand, within Dsui_2204 at 2341.818 kb on - strand at 2341.906 kb on + strand, within Dsui_2204 at 2341.906 kb on + strand, within Dsui_2204 at 2341.987 kb on - strand, within Dsui_2204 at 2342.077 kb on - strand at 2342.108 kb on - strand at 2342.123 kb on + strand at 2342.274 kb on - strand at 2342.301 kb on + strand at 2342.342 kb on + strand at 2342.368 kb on - strand at 2342.378 kb on + strand at 2342.378 kb on + strand at 2342.430 kb on + strand at 2345.091 kb on - strand at 2345.218 kb on + strand at 2345.218 kb on + strand at 2345.257 kb on - strand at 2345.292 kb on + strand at 2345.300 kb on - strand at 2345.300 kb on - strand at 2345.372 kb on + strand, within Dsui_2206 at 2345.380 kb on - strand, within Dsui_2206 at 2345.449 kb on + strand, within Dsui_2206 at 2345.465 kb on - strand, within Dsui_2206 at 2345.467 kb on - strand, within Dsui_2206 at 2345.499 kb on + strand, within Dsui_2206 at 2345.521 kb on + strand, within Dsui_2206 at 2345.558 kb on + strand, within Dsui_2206 at 2345.558 kb on + strand, within Dsui_2206 at 2345.558 kb on + strand, within Dsui_2206 at 2345.558 kb on + strand, within Dsui_2206 at 2345.565 kb on + strand, within Dsui_2206 at 2345.692 kb on - strand, within Dsui_2206 at 2345.702 kb on + strand, within Dsui_2206 at 2345.734 kb on - strand, within Dsui_2206 at 2345.759 kb on - strand at 2345.838 kb on - strand at 2345.908 kb on - strand at 2345.908 kb on - strand at 2345.953 kb on - strand at 2346.024 kb on + strand, within Dsui_2207 at 2346.031 kb on - strand, within Dsui_2207
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 2,341,549 + Dsui_2204 0.66 -0.2 2,341,557 - +0.4 2,341,578 + Dsui_2204 0.67 +0.1 2,341,636 + Dsui_2204 0.70 -0.5 2,341,641 + Dsui_2204 0.70 +0.0 2,341,657 - Dsui_2204 0.71 -0.1 2,341,703 + Dsui_2204 0.73 -0.5 2,341,797 + Dsui_2204 0.77 +0.2 2,341,818 - +1.0 2,341,906 + Dsui_2204 0.82 -0.1 2,341,906 + Dsui_2204 0.82 +0.3 2,341,987 - Dsui_2204 0.86 +1.0 2,342,077 - +1.0 2,342,108 - -1.7 2,342,123 + -0.7 2,342,274 - -0.2 2,342,301 + -0.1 2,342,342 + +0.4 2,342,368 - +0.4 2,342,378 + -0.7 2,342,378 + -0.7 2,342,430 + +0.0 2,345,091 - +0.6 2,345,218 + -1.3 2,345,218 + +0.5 2,345,257 - -0.4 2,345,292 + -0.3 2,345,300 - -0.4 2,345,300 - +0.1 2,345,372 + Dsui_2206 0.22 +0.2 2,345,380 - Dsui_2206 0.23 -0.3 2,345,449 + Dsui_2206 0.36 -0.1 2,345,465 - Dsui_2206 0.39 -0.6 2,345,467 - Dsui_2206 0.39 +0.2 2,345,499 + Dsui_2206 0.45 -0.1 2,345,521 + Dsui_2206 0.49 +0.7 2,345,558 + Dsui_2206 0.56 -0.9 2,345,558 + Dsui_2206 0.56 +0.3 2,345,558 + Dsui_2206 0.56 +0.4 2,345,558 + Dsui_2206 0.56 -0.3 2,345,565 + Dsui_2206 0.57 +0.7 2,345,692 - Dsui_2206 0.80 -0.2 2,345,702 + Dsui_2206 0.82 +0.1 2,345,734 - Dsui_2206 0.88 -0.4 2,345,759 - +0.2 2,345,838 - -0.3 2,345,908 - -0.4 2,345,908 - -0.7 2,345,953 - +0.1 2,346,024 + Dsui_2207 0.16 +0.1 2,346,031 - Dsui_2207 0.17 +0.1
Or see this region's nucleotide sequence