Strain Fitness in Dechlorosoma suillum PS around Dsui_2205

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2204 and Dsui_2205 are separated by 190 nucleotidesDsui_2205 and Dsui_2206 are separated by 177 nucleotidesDsui_2206 and Dsui_2207 are separated by 37 nucleotides Dsui_2204: Dsui_2204 - ABC-type dipeptide transport system, periplasmic component, at 2,340,115 to 2,342,286 _2204 Dsui_2205: Dsui_2205 - aconitate hydratase 2, at 2,342,477 to 2,345,074 _2205 Dsui_2206: Dsui_2206 - putative rRNA methylase SpoU family, at 2,345,252 to 2,345,800 _2206 Dsui_2207: Dsui_2207 - uncharacterized protein involved in response to NO, at 2,345,838 to 2,346,998 _2207 Position (kb) 2342 2343 2344 2345 2346Strain fitness (log2 ratio) -1 0 1at 2341.549 kb on + strand, within Dsui_2204at 2341.557 kb on - strandat 2341.578 kb on + strand, within Dsui_2204at 2341.636 kb on + strand, within Dsui_2204at 2341.641 kb on + strand, within Dsui_2204at 2341.657 kb on - strand, within Dsui_2204at 2341.703 kb on + strand, within Dsui_2204at 2341.797 kb on + strand, within Dsui_2204at 2341.818 kb on - strandat 2341.906 kb on + strand, within Dsui_2204at 2341.906 kb on + strand, within Dsui_2204at 2341.987 kb on - strand, within Dsui_2204at 2342.077 kb on - strandat 2342.108 kb on - strandat 2342.123 kb on + strandat 2342.274 kb on - strandat 2342.301 kb on + strandat 2342.342 kb on + strandat 2342.368 kb on - strandat 2342.378 kb on + strandat 2342.378 kb on + strandat 2342.430 kb on + strandat 2345.091 kb on - strandat 2345.218 kb on + strandat 2345.218 kb on + strandat 2345.257 kb on - strandat 2345.292 kb on + strandat 2345.300 kb on - strandat 2345.300 kb on - strandat 2345.372 kb on + strand, within Dsui_2206at 2345.380 kb on - strand, within Dsui_2206at 2345.449 kb on + strand, within Dsui_2206at 2345.465 kb on - strand, within Dsui_2206at 2345.467 kb on - strand, within Dsui_2206at 2345.499 kb on + strand, within Dsui_2206at 2345.521 kb on + strand, within Dsui_2206at 2345.558 kb on + strand, within Dsui_2206at 2345.558 kb on + strand, within Dsui_2206at 2345.558 kb on + strand, within Dsui_2206at 2345.558 kb on + strand, within Dsui_2206at 2345.565 kb on + strand, within Dsui_2206at 2345.692 kb on - strand, within Dsui_2206at 2345.702 kb on + strand, within Dsui_2206at 2345.734 kb on - strand, within Dsui_2206at 2345.759 kb on - strandat 2345.838 kb on - strandat 2345.908 kb on - strandat 2345.908 kb on - strandat 2345.953 kb on - strandat 2346.024 kb on + strand, within Dsui_2207at 2346.031 kb on - strand, within Dsui_2207

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,341,549 + Dsui_2204 0.66 -0.2
2,341,557 - +0.4
2,341,578 + Dsui_2204 0.67 +0.1
2,341,636 + Dsui_2204 0.70 -0.5
2,341,641 + Dsui_2204 0.70 +0.0
2,341,657 - Dsui_2204 0.71 -0.1
2,341,703 + Dsui_2204 0.73 -0.5
2,341,797 + Dsui_2204 0.77 +0.2
2,341,818 - +1.0
2,341,906 + Dsui_2204 0.82 -0.1
2,341,906 + Dsui_2204 0.82 +0.3
2,341,987 - Dsui_2204 0.86 +1.0
2,342,077 - +1.0
2,342,108 - -1.7
2,342,123 + -0.7
2,342,274 - -0.2
2,342,301 + -0.1
2,342,342 + +0.4
2,342,368 - +0.4
2,342,378 + -0.7
2,342,378 + -0.7
2,342,430 + +0.0
2,345,091 - +0.6
2,345,218 + -1.3
2,345,218 + +0.5
2,345,257 - -0.4
2,345,292 + -0.3
2,345,300 - -0.4
2,345,300 - +0.1
2,345,372 + Dsui_2206 0.22 +0.2
2,345,380 - Dsui_2206 0.23 -0.3
2,345,449 + Dsui_2206 0.36 -0.1
2,345,465 - Dsui_2206 0.39 -0.6
2,345,467 - Dsui_2206 0.39 +0.2
2,345,499 + Dsui_2206 0.45 -0.1
2,345,521 + Dsui_2206 0.49 +0.7
2,345,558 + Dsui_2206 0.56 -0.9
2,345,558 + Dsui_2206 0.56 +0.3
2,345,558 + Dsui_2206 0.56 +0.4
2,345,558 + Dsui_2206 0.56 -0.3
2,345,565 + Dsui_2206 0.57 +0.7
2,345,692 - Dsui_2206 0.80 -0.2
2,345,702 + Dsui_2206 0.82 +0.1
2,345,734 - Dsui_2206 0.88 -0.4
2,345,759 - +0.2
2,345,838 - -0.3
2,345,908 - -0.4
2,345,908 - -0.7
2,345,953 - +0.1
2,346,024 + Dsui_2207 0.16 +0.1
2,346,031 - Dsui_2207 0.17 +0.1

Or see this region's nucleotide sequence