Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2181 and Dsui_2182 are separated by 218 nucleotides Dsui_2182 and Dsui_2183 are separated by 240 nucleotides
Dsui_2181: Dsui_2181 - DNA-binding domain-containing protein, AraC-type, at 2,316,198 to 2,316,983
_2181
Dsui_2182: Dsui_2182 - arabinose efflux permease family protein, at 2,317,202 to 2,318,506
_2182
Dsui_2183: Dsui_2183 - aldose 1-epimerase-like enzyme, at 2,318,747 to 2,319,619
_2183
Position (kb)
2317
2318
2319 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2316.278 kb on - strand, within Dsui_2181 at 2316.475 kb on - strand, within Dsui_2181 at 2316.486 kb on - strand, within Dsui_2181 at 2316.535 kb on + strand at 2316.580 kb on - strand, within Dsui_2181 at 2316.742 kb on + strand at 2316.790 kb on + strand, within Dsui_2181 at 2316.818 kb on - strand, within Dsui_2181 at 2316.837 kb on - strand at 2316.853 kb on - strand, within Dsui_2181 at 2316.854 kb on + strand at 2317.207 kb on - strand at 2317.296 kb on + strand at 2317.455 kb on - strand at 2317.543 kb on + strand at 2317.592 kb on + strand, within Dsui_2182 at 2317.706 kb on + strand at 2317.957 kb on - strand at 2318.032 kb on + strand, within Dsui_2182 at 2318.042 kb on - strand at 2318.084 kb on - strand at 2318.156 kb on + strand, within Dsui_2182 at 2318.284 kb on - strand at 2318.595 kb on + strand at 2318.605 kb on + strand at 2318.768 kb on + strand at 2318.823 kb on + strand at 2318.948 kb on + strand at 2319.343 kb on + strand at 2319.369 kb on - strand, within Dsui_2183 at 2319.402 kb on - strand, within Dsui_2183
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 2,316,278 - Dsui_2181 0.10 +0.6 2,316,475 - Dsui_2181 0.35 +0.5 2,316,486 - Dsui_2181 0.37 +2.0 2,316,535 + +1.0 2,316,580 - Dsui_2181 0.49 +0.4 2,316,742 + -0.3 2,316,790 + Dsui_2181 0.75 +0.0 2,316,818 - Dsui_2181 0.79 +1.0 2,316,837 - +0.4 2,316,853 - Dsui_2181 0.83 -0.0 2,316,854 + +1.0 2,317,207 - +3.0 2,317,296 + +1.0 2,317,455 - +0.0 2,317,543 + +1.0 2,317,592 + Dsui_2182 0.30 -1.0 2,317,706 + +2.0 2,317,957 - +1.0 2,318,032 + Dsui_2182 0.64 -1.7 2,318,042 - +2.0 2,318,084 - +1.0 2,318,156 + Dsui_2182 0.73 +0.0 2,318,284 - +2.0 2,318,595 + +0.4 2,318,605 + -0.8 2,318,768 + +0.4 2,318,823 + +0.0 2,318,948 + +0.7 2,319,343 + +0.4 2,319,369 - Dsui_2183 0.71 -0.8 2,319,402 - Dsui_2183 0.75 +0.4
Or see this region's nucleotide sequence