Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2134 and Dsui_2135 are separated by 273 nucleotides Dsui_2135 and Dsui_2136 are separated by 77 nucleotides Dsui_2136 and Dsui_2137 are separated by 132 nucleotides Dsui_2137 and Dsui_2138 are separated by 35 nucleotides
Dsui_2134: Dsui_2134 - aspartate kinase, monofunctional class, at 2,263,651 to 2,264,874
_2134
Dsui_2135: Dsui_2135 - putative transcriptional regulator, at 2,265,148 to 2,265,453
_2135
Dsui_2136: Dsui_2136 - Fe-S oxidoreductase, at 2,265,531 to 2,266,382
_2136
Dsui_2137: Dsui_2137 - queuosine biosynthesis protein QueD, at 2,266,515 to 2,266,961
_2137
Dsui_2138: Dsui_2138 - putative esterase, at 2,266,997 to 2,267,665
_2138
Position (kb)
2265
2266
2267 Strain fitness (log2 ratio)
-1
0
1
2 at 2264.933 kb on + strand at 2264.941 kb on + strand at 2264.941 kb on + strand at 2264.941 kb on - strand at 2264.941 kb on - strand at 2265.020 kb on + strand at 2265.304 kb on + strand, within Dsui_2135 at 2265.423 kb on + strand at 2265.514 kb on - strand at 2266.422 kb on - strand at 2266.515 kb on + strand at 2266.518 kb on + strand at 2266.715 kb on + strand, within Dsui_2137 at 2266.790 kb on + strand, within Dsui_2137 at 2266.808 kb on + strand, within Dsui_2137 at 2266.960 kb on + strand at 2266.987 kb on + strand at 2267.040 kb on + strand at 2267.045 kb on + strand at 2267.073 kb on - strand at 2267.118 kb on + strand, within Dsui_2138 at 2267.232 kb on + strand, within Dsui_2138
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 2,264,933 + +0.3 2,264,941 + -0.0 2,264,941 + +0.2 2,264,941 - +0.4 2,264,941 - +0.4 2,265,020 + -0.0 2,265,304 + Dsui_2135 0.51 +2.0 2,265,423 + +0.1 2,265,514 - +0.1 2,266,422 - +0.1 2,266,515 + +0.0 2,266,518 + -1.3 2,266,715 + Dsui_2137 0.45 -0.3 2,266,790 + Dsui_2137 0.62 -0.6 2,266,808 + Dsui_2137 0.66 +1.9 2,266,960 + -0.0 2,266,987 + +0.0 2,267,040 + +0.2 2,267,045 + +0.4 2,267,073 - +2.0 2,267,118 + Dsui_2138 0.18 +1.4 2,267,232 + Dsui_2138 0.35 +1.1
Or see this region's nucleotide sequence