Strain Fitness in Dechlorosoma suillum PS around Dsui_2129

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2128 and Dsui_2129 are separated by 84 nucleotidesDsui_2129 and Dsui_2130 are separated by 299 nucleotides Dsui_2128: Dsui_2128 - uncharacterized protein involved in outer membrane biogenesis, at 2,256,574 to 2,259,795 _2128 Dsui_2129: Dsui_2129 - bacterial nucleoid DNA-binding protein, at 2,259,880 to 2,260,164 _2129 Dsui_2130: Dsui_2130 - outer membrane receptor for ferrienterochelin and colicins, at 2,260,464 to 2,262,713 _2130 Position (kb) 2259 2260 2261Strain fitness (log2 ratio) -1 0 1 2 3at 2258.906 kb on - strandat 2258.947 kb on + strand, within Dsui_2128at 2258.970 kb on - strand, within Dsui_2128at 2258.984 kb on + strand, within Dsui_2128at 2259.055 kb on - strand, within Dsui_2128at 2259.078 kb on + strand, within Dsui_2128at 2259.091 kb on - strand, within Dsui_2128at 2259.132 kb on - strand, within Dsui_2128at 2259.202 kb on + strand, within Dsui_2128at 2259.302 kb on - strand, within Dsui_2128at 2259.473 kb on + strandat 2259.485 kb on + strandat 2259.506 kb on + strandat 2259.514 kb on - strandat 2259.565 kb on + strandat 2259.596 kb on + strandat 2259.625 kb on + strandat 2259.672 kb on + strandat 2259.685 kb on - strandat 2259.690 kb on + strandat 2259.804 kb on - strandat 2260.248 kb on - strandat 2260.270 kb on + strandat 2260.515 kb on + strandat 2260.523 kb on - strandat 2260.523 kb on - strandat 2260.633 kb on + strandat 2260.694 kb on - strand, within Dsui_2130at 2260.762 kb on + strandat 2260.777 kb on - strand, within Dsui_2130at 2260.787 kb on - strand, within Dsui_2130at 2260.955 kb on - strand, within Dsui_2130at 2260.955 kb on - strand, within Dsui_2130at 2261.058 kb on - strand, within Dsui_2130

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,258,906 - +3.0
2,258,947 + Dsui_2128 0.74 +0.7
2,258,970 - Dsui_2128 0.74 -0.2
2,258,984 + Dsui_2128 0.75 -0.8
2,259,055 - Dsui_2128 0.77 +0.4
2,259,078 + Dsui_2128 0.78 -0.6
2,259,091 - Dsui_2128 0.78 -0.6
2,259,132 - Dsui_2128 0.79 -0.7
2,259,202 + Dsui_2128 0.82 -0.0
2,259,302 - Dsui_2128 0.85 +0.8
2,259,473 + +0.8
2,259,485 + +0.6
2,259,506 + +0.0
2,259,514 - +0.6
2,259,565 + +1.1
2,259,596 + +0.1
2,259,625 + +0.6
2,259,672 + +0.3
2,259,685 - +0.8
2,259,690 + -0.0
2,259,804 - -1.0
2,260,248 - +0.3
2,260,270 + +0.2
2,260,515 + +0.0
2,260,523 - -1.0
2,260,523 - +0.1
2,260,633 + +0.0
2,260,694 - Dsui_2130 0.10 -0.1
2,260,762 + +0.8
2,260,777 - Dsui_2130 0.14 -0.2
2,260,787 - Dsui_2130 0.14 +0.5
2,260,955 - Dsui_2130 0.22 +0.3
2,260,955 - Dsui_2130 0.22 -0.4
2,261,058 - Dsui_2130 0.26 -1.6

Or see this region's nucleotide sequence