Strain Fitness in Dechlorosoma suillum PS around Dsui_2124

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2123 and Dsui_2124 are separated by 326 nucleotidesDsui_2124 and Dsui_2125 are separated by 17 nucleotides Dsui_2123: Dsui_2123 - EAL domain-containing protein, at 2,248,906 to 2,249,853 _2123 Dsui_2124: Dsui_2124 - methyl-accepting chemotaxis protein, at 2,250,180 to 2,251,283 _2124 Dsui_2125: Dsui_2125 - PAS domain S-box, at 2,251,301 to 2,254,285 _2125 Position (kb) 2250 2251 2252Strain fitness (log2 ratio) -1 0 1 2 3at 2249.245 kb on + strandat 2249.258 kb on - strand, within Dsui_2123at 2249.351 kb on + strandat 2249.507 kb on - strand, within Dsui_2123at 2249.601 kb on - strandat 2249.664 kb on - strand, within Dsui_2123at 2249.774 kb on - strandat 2249.931 kb on - strandat 2250.257 kb on + strandat 2250.333 kb on + strandat 2250.761 kb on + strandat 2250.881 kb on - strandat 2250.924 kb on + strand, within Dsui_2124at 2250.944 kb on + strandat 2250.980 kb on + strandat 2251.023 kb on + strandat 2251.221 kb on + strandat 2251.358 kb on + strandat 2251.511 kb on - strandat 2251.601 kb on + strand, within Dsui_2125at 2251.609 kb on - strandat 2251.638 kb on - strandat 2251.643 kb on + strand, within Dsui_2125at 2251.772 kb on - strand, within Dsui_2125at 2251.839 kb on + strandat 2251.901 kb on - strand, within Dsui_2125at 2252.037 kb on + strandat 2252.109 kb on + strandat 2252.217 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,249,245 + -0.3
2,249,258 - Dsui_2123 0.37 -0.5
2,249,351 + -0.6
2,249,507 - Dsui_2123 0.63 -1.4
2,249,601 - +1.4
2,249,664 - Dsui_2123 0.80 +0.9
2,249,774 - -0.8
2,249,931 - +0.7
2,250,257 + +2.0
2,250,333 + +2.0
2,250,761 + +3.0
2,250,881 - +0.0
2,250,924 + Dsui_2124 0.67 -0.6
2,250,944 + +2.6
2,250,980 + -0.8
2,251,023 + +2.0
2,251,221 + +2.0
2,251,358 + +0.0
2,251,511 - +0.0
2,251,601 + Dsui_2125 0.10 +0.2
2,251,609 - +2.0
2,251,638 - -0.6
2,251,643 + Dsui_2125 0.11 +0.6
2,251,772 - Dsui_2125 0.16 +0.4
2,251,839 + +1.4
2,251,901 - Dsui_2125 0.20 +0.4
2,252,037 + +1.4
2,252,109 + -0.3
2,252,217 - +0.0

Or see this region's nucleotide sequence