Strain Fitness in Dechlorosoma suillum PS around Dsui_2120

Experiment: rich media with sodium chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2119 and Dsui_2120 are separated by 11 nucleotidesDsui_2120 and Dsui_2121 are separated by 35 nucleotidesDsui_2121 and Dsui_2122 overlap by 4 nucleotides Dsui_2119: Dsui_2119 - uncharacterized protein SCO1/SenC/PrrC, at 2,244,880 to 2,246,016 _2119 Dsui_2120: Dsui_2120 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,246,028 to 2,246,882 _2120 Dsui_2121: Dsui_2121 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,246,918 to 2,247,727 _2121 Dsui_2122: Dsui_2122 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 2,247,724 to 2,248,770 _2122 Position (kb) 2246 2247Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2245.183 kb on + strandat 2245.226 kb on + strandat 2245.350 kb on + strandat 2245.553 kb on + strandat 2245.606 kb on - strandat 2245.732 kb on + strandat 2245.796 kb on - strandat 2245.963 kb on + strandat 2245.963 kb on + strandat 2246.044 kb on - strandat 2246.104 kb on - strandat 2246.109 kb on - strandat 2246.114 kb on + strandat 2246.151 kb on + strand, within Dsui_2120at 2246.154 kb on - strand, within Dsui_2120at 2246.169 kb on - strandat 2246.250 kb on + strand, within Dsui_2120at 2246.540 kb on + strandat 2246.549 kb on - strandat 2246.588 kb on + strandat 2246.629 kb on - strand, within Dsui_2120at 2246.767 kb on + strandat 2246.822 kb on - strandat 2246.873 kb on - strandat 2246.905 kb on - strandat 2247.241 kb on + strandat 2247.266 kb on - strand, within Dsui_2121at 2247.421 kb on - strand, within Dsui_2121at 2247.633 kb on - strandat 2247.707 kb on + strandat 2247.715 kb on - strandat 2247.755 kb on + strandat 2247.828 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
remove
2,245,183 + +2.0
2,245,226 + +1.0
2,245,350 + +2.0
2,245,553 + +0.4
2,245,606 - -0.6
2,245,732 + +2.0
2,245,796 - +2.0
2,245,963 + +1.4
2,245,963 + +1.0
2,246,044 - -0.8
2,246,104 - +0.2
2,246,109 - +3.6
2,246,114 + +0.4
2,246,151 + Dsui_2120 0.14 -1.6
2,246,154 - Dsui_2120 0.15 -1.9
2,246,169 - +0.4
2,246,250 + Dsui_2120 0.26 +0.4
2,246,540 + +1.0
2,246,549 - +1.6
2,246,588 + +2.0
2,246,629 - Dsui_2120 0.70 -0.6
2,246,767 + +3.0
2,246,822 - +1.0
2,246,873 - -0.8
2,246,905 - -0.2
2,247,241 + +0.4
2,247,266 - Dsui_2121 0.43 -0.1
2,247,421 - Dsui_2121 0.62 +0.3
2,247,633 - +0.0
2,247,707 + +3.0
2,247,715 - +1.0
2,247,755 + +1.0
2,247,828 + +1.0

Or see this region's nucleotide sequence