Strain Fitness in Dechlorosoma suillum PS around Dsui_2118

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2117 and Dsui_2118 are separated by 97 nucleotidesDsui_2118 and Dsui_2119 overlap by 11 nucleotides Dsui_2117: Dsui_2117 - acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit, at 2,242,919 to 2,243,785 _2117 Dsui_2118: Dsui_2118 - acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit, at 2,243,883 to 2,244,890 _2118 Dsui_2119: Dsui_2119 - uncharacterized protein SCO1/SenC/PrrC, at 2,244,880 to 2,246,016 _2119 Position (kb) 2243 2244 2245Strain fitness (log2 ratio) -2 -1 0 1 2at 2242.895 kb on + strandat 2242.973 kb on - strandat 2243.024 kb on - strandat 2243.024 kb on - strand, within Dsui_2117at 2243.076 kb on - strandat 2243.076 kb on - strand, within Dsui_2117at 2243.270 kb on - strand, within Dsui_2117at 2243.331 kb on + strandat 2243.337 kb on - strandat 2243.396 kb on - strandat 2243.396 kb on - strand, within Dsui_2117at 2243.537 kb on - strandat 2243.712 kb on + strandat 2243.875 kb on - strandat 2243.929 kb on + strandat 2243.937 kb on - strandat 2244.115 kb on + strandat 2244.278 kb on - strandat 2244.310 kb on - strandat 2244.385 kb on + strandat 2244.583 kb on - strand, within Dsui_2118at 2244.616 kb on + strandat 2244.673 kb on + strandat 2245.183 kb on + strandat 2245.226 kb on + strandat 2245.350 kb on + strandat 2245.553 kb on + strandat 2245.606 kb on - strandat 2245.732 kb on + strandat 2245.796 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,242,895 + -1.0
2,242,973 - -0.0
2,243,024 - +0.4
2,243,024 - Dsui_2117 0.12 -1.8
2,243,076 - +1.4
2,243,076 - Dsui_2117 0.18 -1.6
2,243,270 - Dsui_2117 0.40 -0.5
2,243,331 + +2.0
2,243,337 - +2.0
2,243,396 - +2.0
2,243,396 - Dsui_2117 0.55 -0.6
2,243,537 - -0.8
2,243,712 + +0.0
2,243,875 - -0.3
2,243,929 + +2.0
2,243,937 - +0.8
2,244,115 + +2.0
2,244,278 - +0.0
2,244,310 - -0.3
2,244,385 + +0.7
2,244,583 - Dsui_2118 0.69 -0.6
2,244,616 + +0.4
2,244,673 + +2.0
2,245,183 + +2.0
2,245,226 + +1.0
2,245,350 + +2.0
2,245,553 + +0.4
2,245,606 - -0.6
2,245,732 + +2.0
2,245,796 - +2.0

Or see this region's nucleotide sequence