Strain Fitness in Dechlorosoma suillum PS around Dsui_2110

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2108 and Dsui_2110 are separated by 542 nucleotidesDsui_2110 and Dsui_2111 are separated by 113 nucleotides Dsui_2108: Dsui_2108 - superfamily II helicase, at 2,231,454 to 2,234,183 _2108 Dsui_2110: Dsui_2110 - transposase, at 2,234,726 to 2,235,715 _2110 Dsui_2111: Dsui_2111 - cysteine desulfurase-like protein, SufS subfamily, at 2,235,829 to 2,237,721 _2111 Position (kb) 2234 2235 2236Strain fitness (log2 ratio) -1 0 1 2at 2233.754 kb on + strand, within Dsui_2108at 2233.773 kb on - strand, within Dsui_2108at 2233.780 kb on + strand, within Dsui_2108at 2233.950 kb on - strandat 2234.038 kb on - strandat 2234.129 kb on - strandat 2234.168 kb on + strandat 2234.216 kb on - strandat 2234.348 kb on - strandat 2234.386 kb on + strandat 2234.439 kb on + strandat 2234.452 kb on + strandat 2234.499 kb on - strandat 2234.501 kb on + strandat 2234.547 kb on + strandat 2235.771 kb on - strandat 2235.826 kb on + strandat 2235.850 kb on + strandat 2235.976 kb on + strandat 2236.042 kb on - strand, within Dsui_2111at 2236.072 kb on - strand, within Dsui_2111at 2236.083 kb on - strand, within Dsui_2111at 2236.200 kb on - strand, within Dsui_2111at 2236.212 kb on - strand, within Dsui_2111at 2236.241 kb on + strandat 2236.316 kb on + strandat 2236.521 kb on + strand, within Dsui_2111at 2236.540 kb on - strand, within Dsui_2111at 2236.626 kb on - strand, within Dsui_2111at 2236.704 kb on - strand, within Dsui_2111

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,233,754 + Dsui_2108 0.84 -0.0
2,233,773 - Dsui_2108 0.85 -0.1
2,233,780 + Dsui_2108 0.85 +0.0
2,233,950 - -0.3
2,234,038 - +1.0
2,234,129 - -0.2
2,234,168 + +0.0
2,234,216 - -0.5
2,234,348 - +0.1
2,234,386 + +0.2
2,234,439 + +0.5
2,234,452 + -0.1
2,234,499 - +0.4
2,234,501 + +0.0
2,234,547 + +0.2
2,235,771 - -1.3
2,235,826 + +1.4
2,235,850 + +0.4
2,235,976 + -0.2
2,236,042 - Dsui_2111 0.11 -0.5
2,236,072 - Dsui_2111 0.13 +0.1
2,236,083 - Dsui_2111 0.13 +0.6
2,236,200 - Dsui_2111 0.20 -0.7
2,236,212 - Dsui_2111 0.20 -0.1
2,236,241 + -0.6
2,236,316 + +2.0
2,236,521 + Dsui_2111 0.37 -0.0
2,236,540 - Dsui_2111 0.38 -0.6
2,236,626 - Dsui_2111 0.42 -0.3
2,236,704 - Dsui_2111 0.46 -0.6

Or see this region's nucleotide sequence