Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2088 and Dsui_2089 are separated by 102 nucleotides Dsui_2089 and Dsui_2090 are separated by 133 nucleotides Dsui_2090 and Dsui_2091 overlap by 4 nucleotides Dsui_2091 and Dsui_2092 overlap by 37 nucleotides
Dsui_2088: Dsui_2088 - cytochrome c, at 2,210,365 to 2,211,318
_2088
Dsui_2089: Dsui_2089 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 2,211,421 to 2,212,176
_2089
Dsui_2090: Dsui_2090 - transcriptional regulator, at 2,212,310 to 2,213,251
_2090
Dsui_2091: Dsui_2091 - hypothetical protein, at 2,213,248 to 2,213,385
_2091
Dsui_2092: Dsui_2092 - hypothetical protein, at 2,213,349 to 2,214,350
_2092
Position (kb)
2212
2213
2214 Strain fitness (log2 ratio)
-1
0
1
2 at 2211.364 kb on - strand at 2211.364 kb on - strand at 2211.393 kb on + strand at 2211.532 kb on + strand at 2211.764 kb on - strand at 2211.825 kb on + strand at 2212.184 kb on - strand at 2212.185 kb on + strand at 2212.308 kb on + strand at 2212.308 kb on + strand at 2212.308 kb on + strand at 2212.318 kb on + strand at 2212.326 kb on - strand at 2212.326 kb on - strand at 2212.362 kb on + strand at 2212.394 kb on + strand at 2212.571 kb on + strand, within Dsui_2090 at 2212.589 kb on - strand, within Dsui_2090 at 2212.628 kb on + strand, within Dsui_2090 at 2212.684 kb on + strand, within Dsui_2090 at 2212.887 kb on + strand, within Dsui_2090 at 2212.932 kb on - strand at 2213.380 kb on - strand at 2213.456 kb on - strand, within Dsui_2092 at 2213.470 kb on + strand, within Dsui_2092 at 2213.579 kb on + strand at 2213.712 kb on - strand at 2213.727 kb on - strand at 2214.073 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 2,211,364 - +2.0 2,211,364 - +0.4 2,211,393 + +0.0 2,211,532 + +0.0 2,211,764 - +0.2 2,211,825 + -0.3 2,212,184 - +1.4 2,212,185 + +0.7 2,212,308 + -0.0 2,212,308 + +1.4 2,212,308 + -1.3 2,212,318 + +0.2 2,212,326 - +1.0 2,212,326 - +1.0 2,212,362 + +1.1 2,212,394 + +0.1 2,212,571 + Dsui_2090 0.28 -0.1 2,212,589 - Dsui_2090 0.30 +1.4 2,212,628 + Dsui_2090 0.34 +2.2 2,212,684 + Dsui_2090 0.40 +0.2 2,212,887 + Dsui_2090 0.61 -0.2 2,212,932 - +1.0 2,213,380 - +1.0 2,213,456 - Dsui_2092 0.11 -0.1 2,213,470 + Dsui_2092 0.12 +0.9 2,213,579 + +1.0 2,213,712 - -0.6 2,213,727 - +1.0 2,214,073 + +2.0
Or see this region's nucleotide sequence