Strain Fitness in Dechlorosoma suillum PS around Dsui_2090

Experiment: rich media with sodium chlorite 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2088 and Dsui_2089 are separated by 102 nucleotidesDsui_2089 and Dsui_2090 are separated by 133 nucleotidesDsui_2090 and Dsui_2091 overlap by 4 nucleotidesDsui_2091 and Dsui_2092 overlap by 37 nucleotides Dsui_2088: Dsui_2088 - cytochrome c, at 2,210,365 to 2,211,318 _2088 Dsui_2089: Dsui_2089 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 2,211,421 to 2,212,176 _2089 Dsui_2090: Dsui_2090 - transcriptional regulator, at 2,212,310 to 2,213,251 _2090 Dsui_2091: Dsui_2091 - hypothetical protein, at 2,213,248 to 2,213,385 _2091 Dsui_2092: Dsui_2092 - hypothetical protein, at 2,213,349 to 2,214,350 _2092 Position (kb) 2212 2213 2214Strain fitness (log2 ratio) -1 0 1 2at 2211.364 kb on - strandat 2211.364 kb on - strandat 2211.393 kb on + strandat 2211.532 kb on + strandat 2211.764 kb on - strandat 2211.825 kb on + strandat 2212.184 kb on - strandat 2212.185 kb on + strandat 2212.308 kb on + strandat 2212.308 kb on + strandat 2212.308 kb on + strandat 2212.318 kb on + strandat 2212.326 kb on - strandat 2212.326 kb on - strandat 2212.362 kb on + strandat 2212.394 kb on + strandat 2212.571 kb on + strand, within Dsui_2090at 2212.589 kb on - strand, within Dsui_2090at 2212.628 kb on + strand, within Dsui_2090at 2212.684 kb on + strand, within Dsui_2090at 2212.887 kb on + strand, within Dsui_2090at 2212.932 kb on - strandat 2213.380 kb on - strandat 2213.456 kb on - strand, within Dsui_2092at 2213.470 kb on + strand, within Dsui_2092at 2213.579 kb on + strandat 2213.712 kb on - strandat 2213.727 kb on - strandat 2214.073 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
remove
2,211,364 - +2.0
2,211,364 - +0.4
2,211,393 + +0.0
2,211,532 + +0.0
2,211,764 - +0.2
2,211,825 + -0.3
2,212,184 - +1.4
2,212,185 + +0.7
2,212,308 + -0.0
2,212,308 + +1.4
2,212,308 + -1.3
2,212,318 + +0.2
2,212,326 - +1.0
2,212,326 - +1.0
2,212,362 + +1.1
2,212,394 + +0.1
2,212,571 + Dsui_2090 0.28 -0.1
2,212,589 - Dsui_2090 0.30 +1.4
2,212,628 + Dsui_2090 0.34 +2.2
2,212,684 + Dsui_2090 0.40 +0.2
2,212,887 + Dsui_2090 0.61 -0.2
2,212,932 - +1.0
2,213,380 - +1.0
2,213,456 - Dsui_2092 0.11 -0.1
2,213,470 + Dsui_2092 0.12 +0.9
2,213,579 + +1.0
2,213,712 - -0.6
2,213,727 - +1.0
2,214,073 + +2.0

Or see this region's nucleotide sequence