Strain Fitness in Dechlorosoma suillum PS around Dsui_1950

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1948 and Dsui_1949 overlap by 14 nucleotidesDsui_1949 and Dsui_1950 overlap by 11 nucleotidesDsui_1950 and Dsui_1951 overlap by 4 nucleotidesDsui_1951 and Dsui_1952 are separated by 13 nucleotides Dsui_1948: Dsui_1948 - dTDP-glucose 4,6-dehydratase, at 2,060,523 to 2,061,584 _1948 Dsui_1949: Dsui_1949 - dTDP-4-dehydrorhamnose reductase, at 2,061,571 to 2,062,500 _1949 Dsui_1950: Dsui_1950 - glucose-1-phosphate thymidylyltransferase, short form, at 2,062,490 to 2,063,380 _1950 Dsui_1951: Dsui_1951 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 2,063,377 to 2,063,925 _1951 Dsui_1952: Dsui_1952 - D-heptose-7- phosphate 1-kinase, at 2,063,939 to 2,064,886 _1952 Position (kb) 2062 2063 2064Strain fitness (log2 ratio) -1 0 1at 2061.551 kb on + strandat 2061.579 kb on + strandat 2062.075 kb on + strand, within Dsui_1949at 2062.451 kb on - strandat 2062.483 kb on + strandat 2062.483 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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2,061,551 + +0.0
2,061,579 + -0.3
2,062,075 + Dsui_1949 0.54 +0.4
2,062,451 - +1.7
2,062,483 + -0.0
2,062,483 + -0.3

Or see this region's nucleotide sequence