Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1813 and Dsui_1814 are separated by 13 nucleotides Dsui_1814 and Dsui_1815 are separated by 82 nucleotides Dsui_1815 and Dsui_1816 are separated by 108 nucleotides Dsui_1816 and Dsui_1817 are separated by 222 nucleotides
Dsui_1813: Dsui_1813 - cytochrome b subunit of the bc complex, at 1,910,317 to 1,911,621
_1813
Dsui_1814: Dsui_1814 - cytochrome c1, at 1,911,635 to 1,912,348
_1814
Dsui_1815: Dsui_1815 - glutathione S-transferase, at 1,912,431 to 1,913,027
_1815
Dsui_1816: Dsui_1816 - stringent starvation protein B, at 1,913,136 to 1,913,555
_1816
Dsui_1817: Dsui_1817 - anaerobic dehydrogenase, typically selenocysteine-containing, at 1,913,778 to 1,916,543
_1817
Position (kb)
1912
1913
1914 Strain fitness (log2 ratio)
-1
0
1 at 1913.108 kb on + strand at 1913.155 kb on + strand at 1913.156 kb on + strand at 1913.164 kb on - strand at 1913.208 kb on - strand, within Dsui_1816 at 1913.208 kb on - strand, within Dsui_1816 at 1913.465 kb on - strand, within Dsui_1816 at 1913.527 kb on + strand at 1913.657 kb on - strand at 1913.683 kb on + strand at 1913.769 kb on + strand at 1913.806 kb on + strand at 1913.814 kb on - strand at 1913.814 kb on - strand at 1913.814 kb on - strand at 1913.814 kb on - strand at 1913.853 kb on + strand at 1913.929 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 1,913,108 + +0.0 1,913,155 + -0.3 1,913,156 + +0.0 1,913,164 - +0.7 1,913,208 - Dsui_1816 0.17 -1.1 1,913,208 - Dsui_1816 0.17 +0.0 1,913,465 - Dsui_1816 0.78 +0.1 1,913,527 + +1.3 1,913,657 - +0.6 1,913,683 + -0.2 1,913,769 + -1.2 1,913,806 + +0.1 1,913,814 - +1.6 1,913,814 - +0.7 1,913,814 - +0.9 1,913,814 - +0.7 1,913,853 + +1.5 1,913,929 + -0.4
Or see this region's nucleotide sequence