Strain Fitness in Dechlorosoma suillum PS around Dsui_1815

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1813 and Dsui_1814 are separated by 13 nucleotidesDsui_1814 and Dsui_1815 are separated by 82 nucleotidesDsui_1815 and Dsui_1816 are separated by 108 nucleotidesDsui_1816 and Dsui_1817 are separated by 222 nucleotides Dsui_1813: Dsui_1813 - cytochrome b subunit of the bc complex, at 1,910,317 to 1,911,621 _1813 Dsui_1814: Dsui_1814 - cytochrome c1, at 1,911,635 to 1,912,348 _1814 Dsui_1815: Dsui_1815 - glutathione S-transferase, at 1,912,431 to 1,913,027 _1815 Dsui_1816: Dsui_1816 - stringent starvation protein B, at 1,913,136 to 1,913,555 _1816 Dsui_1817: Dsui_1817 - anaerobic dehydrogenase, typically selenocysteine-containing, at 1,913,778 to 1,916,543 _1817 Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -1 0 1at 1913.108 kb on + strandat 1913.155 kb on + strandat 1913.156 kb on + strandat 1913.164 kb on - strandat 1913.208 kb on - strand, within Dsui_1816at 1913.208 kb on - strand, within Dsui_1816at 1913.465 kb on - strand, within Dsui_1816at 1913.527 kb on + strandat 1913.657 kb on - strandat 1913.683 kb on + strandat 1913.769 kb on + strandat 1913.806 kb on + strandat 1913.814 kb on - strandat 1913.814 kb on - strandat 1913.814 kb on - strandat 1913.814 kb on - strandat 1913.853 kb on + strandat 1913.929 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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1,913,108 + +0.0
1,913,155 + -0.3
1,913,156 + +0.0
1,913,164 - +0.7
1,913,208 - Dsui_1816 0.17 -1.1
1,913,208 - Dsui_1816 0.17 +0.0
1,913,465 - Dsui_1816 0.78 +0.1
1,913,527 + +1.3
1,913,657 - +0.6
1,913,683 + -0.2
1,913,769 + -1.2
1,913,806 + +0.1
1,913,814 - +1.6
1,913,814 - +0.7
1,913,814 - +0.9
1,913,814 - +0.7
1,913,853 + +1.5
1,913,929 + -0.4

Or see this region's nucleotide sequence