Strain Fitness in Dechlorosoma suillum PS around Dsui_1538

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1536 and Dsui_1537 are separated by 120 nucleotidesDsui_1537 and Dsui_1538 are separated by 47 nucleotidesDsui_1538 and Dsui_1539 are separated by 17 nucleotidesDsui_1539 and Dsui_1540 are separated by 177 nucleotides Dsui_1536: Dsui_1536 - PilZ domain-containing protein, at 1,597,379 to 1,597,705 _1536 Dsui_1537: Dsui_1537 - DNA repair protein radc, at 1,597,826 to 1,598,503 _1537 Dsui_1538: Dsui_1538 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, at 1,598,551 to 1,599,735 _1538 Dsui_1539: Dsui_1539 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut, at 1,599,753 to 1,600,202 _1539 Dsui_1540: Dsui_1540 - NAD(FAD)-dependent dehydrogenase, at 1,600,380 to 1,601,675 _1540 Position (kb) 1598 1599 1600Strain fitness (log2 ratio) -2 -1 0 1 2at 1597.597 kb on + strand, within Dsui_1536at 1597.597 kb on + strandat 1597.597 kb on + strand, within Dsui_1536at 1597.604 kb on + strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.605 kb on - strand, within Dsui_1536at 1597.773 kb on + strandat 1597.788 kb on + strandat 1597.788 kb on + strandat 1597.796 kb on - strandat 1597.798 kb on - strandat 1597.798 kb on - strandat 1597.798 kb on - strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.824 kb on + strandat 1597.827 kb on - strandat 1597.827 kb on - strandat 1597.832 kb on - strandat 1597.832 kb on - strandat 1597.832 kb on - strandat 1597.837 kb on - strandat 1597.911 kb on - strand, within Dsui_1537at 1597.917 kb on - strandat 1597.927 kb on + strandat 1597.969 kb on + strandat 1598.214 kb on + strand, within Dsui_1537at 1598.253 kb on + strand, within Dsui_1537at 1598.261 kb on - strand, within Dsui_1537at 1598.277 kb on - strand, within Dsui_1537at 1598.337 kb on - strand, within Dsui_1537at 1598.377 kb on + strandat 1598.511 kb on + strandat 1600.354 kb on + strandat 1600.425 kb on + strandat 1600.543 kb on - strand, within Dsui_1540

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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1,597,597 + Dsui_1536 0.67 -0.0
1,597,597 + -0.0
1,597,597 + Dsui_1536 0.67 -0.2
1,597,604 + Dsui_1536 0.69 -0.0
1,597,605 - Dsui_1536 0.69 +0.0
1,597,605 - Dsui_1536 0.69 +0.2
1,597,605 - Dsui_1536 0.69 -0.1
1,597,605 - Dsui_1536 0.69 +0.2
1,597,605 - Dsui_1536 0.69 -0.3
1,597,773 + -0.6
1,597,788 + +0.1
1,597,788 + -0.3
1,597,796 - +0.7
1,597,798 - +0.5
1,597,798 - -0.9
1,597,798 - -2.0
1,597,824 + -0.0
1,597,824 + -0.6
1,597,824 + +0.4
1,597,824 + +1.2
1,597,824 + +1.0
1,597,824 + -0.3
1,597,827 - -0.0
1,597,827 - +0.8
1,597,832 - +1.0
1,597,832 - +1.0
1,597,832 - +1.0
1,597,837 - -0.6
1,597,911 - Dsui_1537 0.13 -0.1
1,597,917 - +0.4
1,597,927 + -0.0
1,597,969 + +2.0
1,598,214 + Dsui_1537 0.57 -0.4
1,598,253 + Dsui_1537 0.63 +1.0
1,598,261 - Dsui_1537 0.64 +1.4
1,598,277 - Dsui_1537 0.67 +0.0
1,598,337 - Dsui_1537 0.75 +1.0
1,598,377 + +0.6
1,598,511 + +0.1
1,600,354 + +0.2
1,600,425 + -0.2
1,600,543 - Dsui_1540 0.13 -0.3

Or see this region's nucleotide sequence