Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1536 and Dsui_1537 are separated by 120 nucleotides Dsui_1537 and Dsui_1538 are separated by 47 nucleotides Dsui_1538 and Dsui_1539 are separated by 17 nucleotides Dsui_1539 and Dsui_1540 are separated by 177 nucleotides
Dsui_1536: Dsui_1536 - PilZ domain-containing protein, at 1,597,379 to 1,597,705
_1536
Dsui_1537: Dsui_1537 - DNA repair protein radc, at 1,597,826 to 1,598,503
_1537
Dsui_1538: Dsui_1538 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, at 1,598,551 to 1,599,735
_1538
Dsui_1539: Dsui_1539 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut, at 1,599,753 to 1,600,202
_1539
Dsui_1540: Dsui_1540 - NAD(FAD)-dependent dehydrogenase, at 1,600,380 to 1,601,675
_1540
Position (kb)
1598
1599
1600 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1597.597 kb on + strand, within Dsui_1536 at 1597.597 kb on + strand at 1597.597 kb on + strand, within Dsui_1536 at 1597.604 kb on + strand, within Dsui_1536 at 1597.605 kb on - strand, within Dsui_1536 at 1597.605 kb on - strand, within Dsui_1536 at 1597.605 kb on - strand, within Dsui_1536 at 1597.605 kb on - strand, within Dsui_1536 at 1597.605 kb on - strand, within Dsui_1536 at 1597.773 kb on + strand at 1597.788 kb on + strand at 1597.788 kb on + strand at 1597.796 kb on - strand at 1597.798 kb on - strand at 1597.798 kb on - strand at 1597.798 kb on - strand at 1597.824 kb on + strand at 1597.824 kb on + strand at 1597.824 kb on + strand at 1597.824 kb on + strand at 1597.824 kb on + strand at 1597.824 kb on + strand at 1597.827 kb on - strand at 1597.827 kb on - strand at 1597.832 kb on - strand at 1597.832 kb on - strand at 1597.832 kb on - strand at 1597.837 kb on - strand at 1597.911 kb on - strand, within Dsui_1537 at 1597.917 kb on - strand at 1597.927 kb on + strand at 1597.969 kb on + strand at 1598.214 kb on + strand, within Dsui_1537 at 1598.253 kb on + strand, within Dsui_1537 at 1598.261 kb on - strand, within Dsui_1537 at 1598.277 kb on - strand, within Dsui_1537 at 1598.337 kb on - strand, within Dsui_1537 at 1598.377 kb on + strand at 1598.511 kb on + strand at 1600.354 kb on + strand at 1600.425 kb on + strand at 1600.543 kb on - strand, within Dsui_1540
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 1,597,597 + Dsui_1536 0.67 -0.0 1,597,597 + -0.0 1,597,597 + Dsui_1536 0.67 -0.2 1,597,604 + Dsui_1536 0.69 -0.0 1,597,605 - Dsui_1536 0.69 +0.0 1,597,605 - Dsui_1536 0.69 +0.2 1,597,605 - Dsui_1536 0.69 -0.1 1,597,605 - Dsui_1536 0.69 +0.2 1,597,605 - Dsui_1536 0.69 -0.3 1,597,773 + -0.6 1,597,788 + +0.1 1,597,788 + -0.3 1,597,796 - +0.7 1,597,798 - +0.5 1,597,798 - -0.9 1,597,798 - -2.0 1,597,824 + -0.0 1,597,824 + -0.6 1,597,824 + +0.4 1,597,824 + +1.2 1,597,824 + +1.0 1,597,824 + -0.3 1,597,827 - -0.0 1,597,827 - +0.8 1,597,832 - +1.0 1,597,832 - +1.0 1,597,832 - +1.0 1,597,837 - -0.6 1,597,911 - Dsui_1537 0.13 -0.1 1,597,917 - +0.4 1,597,927 + -0.0 1,597,969 + +2.0 1,598,214 + Dsui_1537 0.57 -0.4 1,598,253 + Dsui_1537 0.63 +1.0 1,598,261 - Dsui_1537 0.64 +1.4 1,598,277 - Dsui_1537 0.67 +0.0 1,598,337 - Dsui_1537 0.75 +1.0 1,598,377 + +0.6 1,598,511 + +0.1 1,600,354 + +0.2 1,600,425 + -0.2 1,600,543 - Dsui_1540 0.13 -0.3
Or see this region's nucleotide sequence