Strain Fitness in Dechlorosoma suillum PS around Dsui_1507

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1504 and Dsui_1505 are separated by 18 nucleotidesDsui_1505 and Dsui_1507 are separated by 308 nucleotidesDsui_1507 and Dsui_1508 overlap by 11 nucleotides Dsui_1504: Dsui_1504 - trypsin-like serine protease with C-terminal PDZ domain, at 1,569,175 to 1,570,326 _1504 Dsui_1505: Dsui_1505 - phage-related lysozyme (muraminidase), at 1,570,345 to 1,570,809 _1505 Dsui_1507: Dsui_1507 - transposase, at 1,571,118 to 1,572,608 _1507 Dsui_1508: Dsui_1508 - DNA replication protein, at 1,572,598 to 1,573,332 _1508 Position (kb) 1571 1572 1573Strain fitness (log2 ratio) -1 0 1at 1570.245 kb on + strandat 1570.580 kb on - strand, within Dsui_1505at 1570.733 kb on + strand, within Dsui_1505at 1570.890 kb on + strandat 1570.968 kb on - strandat 1571.009 kb on - strandat 1571.009 kb on - strandat 1571.009 kb on - strandat 1571.009 kb on - strandat 1573.395 kb on - strandat 1573.407 kb on + strandat 1573.515 kb on + strandat 1573.525 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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1,570,245 + -1.6
1,570,580 - Dsui_1505 0.51 -0.0
1,570,733 + Dsui_1505 0.83 +0.6
1,570,890 + -0.2
1,570,968 - -0.7
1,571,009 - +0.4
1,571,009 - +0.5
1,571,009 - +0.4
1,571,009 - +0.1
1,573,395 - -0.7
1,573,407 + -0.6
1,573,515 + -0.1
1,573,525 - -0.1

Or see this region's nucleotide sequence