Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1424 and Dsui_1425 are separated by 69 nucleotides Dsui_1425 and Dsui_1426 are separated by 23 nucleotides Dsui_1426 and Dsui_1427 are separated by 20 nucleotides Dsui_1427 and Dsui_1428 are separated by 19 nucleotides
Dsui_1424: Dsui_1424 - twin arginine targeting protein translocase subunit TatC, at 1,476,467 to 1,477,342
_1424
Dsui_1425: Dsui_1425 - putative glutamine amidotransferase, at 1,477,412 to 1,478,236
_1425
Dsui_1426: Dsui_1426 - periplasmic serine protease, Do/DeqQ family, at 1,478,260 to 1,479,414
_1426
Dsui_1427: Dsui_1427 - dinuclear metal center protein, YbgI/SA1388 family, at 1,479,435 to 1,480,181
_1427
Dsui_1428: Dsui_1428 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase, at 1,480,201 to 1,480,917
_1428
Position (kb)
1478
1479
1480 Strain fitness (log2 ratio)
-1
0
1
2 at 1477.307 kb on + strand at 1477.514 kb on + strand at 1477.514 kb on + strand, within Dsui_1425 at 1477.542 kb on + strand, within Dsui_1425 at 1477.626 kb on + strand, within Dsui_1425 at 1477.680 kb on - strand, within Dsui_1425 at 1477.682 kb on - strand, within Dsui_1425 at 1477.965 kb on + strand, within Dsui_1425 at 1477.998 kb on - strand, within Dsui_1425 at 1478.058 kb on + strand, within Dsui_1425 at 1478.069 kb on + strand, within Dsui_1425 at 1478.410 kb on - strand, within Dsui_1426 at 1478.420 kb on - strand, within Dsui_1426 at 1478.517 kb on + strand, within Dsui_1426 at 1478.747 kb on + strand, within Dsui_1426 at 1478.801 kb on - strand, within Dsui_1426 at 1478.846 kb on + strand at 1478.938 kb on - strand, within Dsui_1426 at 1479.096 kb on + strand, within Dsui_1426 at 1479.096 kb on + strand, within Dsui_1426 at 1479.104 kb on - strand, within Dsui_1426 at 1479.214 kb on - strand, within Dsui_1426 at 1479.215 kb on + strand, within Dsui_1426 at 1479.335 kb on + strand at 1479.344 kb on - strand at 1479.368 kb on + strand at 1479.375 kb on + strand at 1479.473 kb on + strand at 1479.575 kb on - strand at 1479.685 kb on - strand at 1479.685 kb on - strand, within Dsui_1427 at 1479.696 kb on - strand, within Dsui_1427 at 1479.696 kb on - strand at 1479.700 kb on - strand, within Dsui_1427 at 1479.710 kb on + strand, within Dsui_1427 at 1479.784 kb on - strand at 1479.965 kb on + strand, within Dsui_1427 at 1479.990 kb on - strand, within Dsui_1427 at 1480.046 kb on - strand at 1480.183 kb on - strand at 1480.234 kb on + strand at 1480.270 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 1,477,307 + +1.0 1,477,514 + +0.4 1,477,514 + Dsui_1425 0.12 -0.2 1,477,542 + Dsui_1425 0.16 +0.5 1,477,626 + Dsui_1425 0.26 +0.5 1,477,680 - Dsui_1425 0.32 -0.1 1,477,682 - Dsui_1425 0.33 +1.5 1,477,965 + Dsui_1425 0.67 -0.6 1,477,998 - Dsui_1425 0.71 -0.2 1,478,058 + Dsui_1425 0.78 -0.3 1,478,069 + Dsui_1425 0.80 +1.0 1,478,410 - Dsui_1426 0.13 +0.3 1,478,420 - Dsui_1426 0.14 -0.1 1,478,517 + Dsui_1426 0.22 -0.9 1,478,747 + Dsui_1426 0.42 +1.0 1,478,801 - Dsui_1426 0.47 +1.0 1,478,846 + -1.0 1,478,938 - Dsui_1426 0.59 +1.0 1,479,096 + Dsui_1426 0.72 +0.4 1,479,096 + Dsui_1426 0.72 +0.0 1,479,104 - Dsui_1426 0.73 +0.4 1,479,214 - Dsui_1426 0.83 +0.1 1,479,215 + Dsui_1426 0.83 +0.1 1,479,335 + -0.8 1,479,344 - -0.1 1,479,368 + -1.1 1,479,375 + -1.1 1,479,473 + +0.5 1,479,575 - +1.0 1,479,685 - +2.0 1,479,685 - Dsui_1427 0.33 -0.4 1,479,696 - Dsui_1427 0.35 +0.4 1,479,696 - +2.0 1,479,700 - Dsui_1427 0.35 -1.1 1,479,710 + Dsui_1427 0.37 -0.9 1,479,784 - +0.4 1,479,965 + Dsui_1427 0.71 -1.0 1,479,990 - Dsui_1427 0.74 -0.1 1,480,046 - +1.4 1,480,183 - +0.4 1,480,234 + +0.1 1,480,270 - -0.1
Or see this region's nucleotide sequence