Strain Fitness in Dechlorosoma suillum PS around Dsui_1315

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1312 and Dsui_1313 overlap by 4 nucleotidesDsui_1313 and Dsui_1314 are separated by 3 nucleotidesDsui_1314 and Dsui_1315 are separated by 15 nucleotidesDsui_1315 and Dsui_1316 are separated by 30 nucleotidesDsui_1316 and Dsui_1317 overlap by 22 nucleotides Dsui_1312: Dsui_1312 - NTP pyrophosphohydrolase, at 1,372,252 to 1,372,719 _1312 Dsui_1313: Dsui_1313 - Barstar, RNAse (barnase) inhibitor, at 1,372,716 to 1,373,162 _1313 Dsui_1314: Dsui_1314 - guanyl-specific ribonuclease Sa, at 1,373,166 to 1,373,558 _1314 Dsui_1315: Dsui_1315 - aspartyl-tRNA synthetase, at 1,373,574 to 1,375,373 _1315 Dsui_1316: Dsui_1316 - hypothetical protein, at 1,375,404 to 1,376,045 _1316 Dsui_1317: Dsui_1317 - putative regulatory protein, FmdB family, at 1,376,024 to 1,376,296 _1317 Position (kb) 1373 1374 1375 1376Strain fitness (log2 ratio) -1 0 1 2 3at 1372.647 kb on + strand, within Dsui_1312at 1372.649 kb on + strand, within Dsui_1312at 1372.649 kb on - strand, within Dsui_1312at 1372.789 kb on - strand, within Dsui_1313at 1372.824 kb on + strandat 1372.837 kb on - strand, within Dsui_1313at 1372.837 kb on - strand, within Dsui_1313at 1372.856 kb on - strand, within Dsui_1313at 1372.879 kb on + strandat 1372.896 kb on + strand, within Dsui_1313at 1372.904 kb on - strand, within Dsui_1313at 1372.904 kb on - strand, within Dsui_1313at 1372.904 kb on - strand, within Dsui_1313at 1372.904 kb on - strand, within Dsui_1313at 1372.909 kb on - strand, within Dsui_1313at 1373.110 kb on + strand, within Dsui_1313at 1373.110 kb on + strandat 1373.118 kb on - strandat 1373.298 kb on + strandat 1373.305 kb on + strand, within Dsui_1314at 1373.320 kb on + strandat 1373.375 kb on - strand, within Dsui_1314at 1373.393 kb on + strand, within Dsui_1314at 1373.394 kb on + strandat 1373.571 kb on + strandat 1373.579 kb on - strandat 1375.453 kb on - strandat 1375.480 kb on - strand, within Dsui_1316at 1375.481 kb on - strand, within Dsui_1316at 1375.678 kb on - strand, within Dsui_1316at 1375.720 kb on - strand, within Dsui_1316at 1375.956 kb on - strand, within Dsui_1316at 1376.156 kb on - strand, within Dsui_1317at 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.349 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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1,372,647 + Dsui_1312 0.84 -0.8
1,372,649 + Dsui_1312 0.85 -0.9
1,372,649 - Dsui_1312 0.85 +0.3
1,372,789 - Dsui_1313 0.16 +1.3
1,372,824 + +1.0
1,372,837 - Dsui_1313 0.27 -0.3
1,372,837 - Dsui_1313 0.27 -0.5
1,372,856 - Dsui_1313 0.31 +1.0
1,372,879 + +2.0
1,372,896 + Dsui_1313 0.40 -0.6
1,372,904 - Dsui_1313 0.42 -1.1
1,372,904 - Dsui_1313 0.42 +0.4
1,372,904 - Dsui_1313 0.42 +0.5
1,372,904 - Dsui_1313 0.42 +0.4
1,372,909 - Dsui_1313 0.43 +1.0
1,373,110 + Dsui_1313 0.88 +0.7
1,373,110 + +0.4
1,373,118 - +0.4
1,373,298 + +3.6
1,373,305 + Dsui_1314 0.35 +0.3
1,373,320 + +1.4
1,373,375 - Dsui_1314 0.53 +0.9
1,373,393 + Dsui_1314 0.58 +0.7
1,373,394 + +1.3
1,373,571 + -0.2
1,373,579 - -0.1
1,375,453 - +1.6
1,375,480 - Dsui_1316 0.12 -1.5
1,375,481 - Dsui_1316 0.12 +0.1
1,375,678 - Dsui_1316 0.43 -0.7
1,375,720 - Dsui_1316 0.49 -1.6
1,375,956 - Dsui_1316 0.86 -1.2
1,376,156 - Dsui_1317 0.48 -0.7
1,376,339 + -1.5
1,376,339 + -0.3
1,376,339 + -0.3
1,376,339 + -0.0
1,376,339 + -1.5
1,376,339 + +0.1
1,376,347 - +0.0
1,376,347 - -0.0
1,376,347 - -0.1
1,376,347 - -0.1
1,376,347 - +0.3
1,376,349 + -0.0

Or see this region's nucleotide sequence