Strain Fitness in Dechlorosoma suillum PS around Dsui_1122

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1121 and Dsui_1122 are separated by 195 nucleotidesDsui_1122 and Dsui_1123 are separated by 150 nucleotides Dsui_1121: Dsui_1121 - alternative sigma factor RpoH, at 1,168,165 to 1,169,022 _1121 Dsui_1122: Dsui_1122 - dihydroxy-acid dehydratase, at 1,169,218 to 1,171,077 _1122 Dsui_1123: Dsui_1123 - methyl-accepting chemotaxis protein, at 1,171,228 to 1,172,841 _1123 Position (kb) 1169 1170 1171 1172Strain fitness (log2 ratio) -1 0 1at 1169.005 kb on + strandat 1169.013 kb on - strandat 1169.034 kb on + strandat 1169.055 kb on + strandat 1169.063 kb on - strandat 1169.063 kb on - strandat 1169.077 kb on + strandat 1171.443 kb on - strandat 1171.458 kb on - strand, within Dsui_1123at 1171.502 kb on + strand, within Dsui_1123at 1171.573 kb on - strand, within Dsui_1123at 1171.575 kb on + strand, within Dsui_1123at 1171.575 kb on + strand, within Dsui_1123at 1171.705 kb on - strand, within Dsui_1123at 1171.897 kb on + strand, within Dsui_1123at 1171.900 kb on - strand, within Dsui_1123

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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1,169,005 + -0.9
1,169,013 - -0.4
1,169,034 + -0.0
1,169,055 + +0.7
1,169,063 - -0.6
1,169,063 - +0.1
1,169,077 + -0.0
1,171,443 - +0.8
1,171,458 - Dsui_1123 0.14 +0.3
1,171,502 + Dsui_1123 0.17 +1.4
1,171,573 - Dsui_1123 0.21 +0.2
1,171,575 + Dsui_1123 0.21 -0.6
1,171,575 + Dsui_1123 0.21 +0.6
1,171,705 - Dsui_1123 0.30 +0.0
1,171,897 + Dsui_1123 0.41 +0.5
1,171,900 - Dsui_1123 0.42 -0.0

Or see this region's nucleotide sequence