Strain Fitness in Dechlorosoma suillum PS around Dsui_0712

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0710 and Dsui_0711 overlap by 4 nucleotidesDsui_0711 and Dsui_0712 overlap by 23 nucleotidesDsui_0712 and Dsui_0713 are separated by 109 nucleotidesDsui_0713 and Dsui_0714 are separated by 60 nucleotides Dsui_0710: Dsui_0710 - competence/damage-inducible protein CinA-like protein, at 705,416 to 705,931 _0710 Dsui_0711: Dsui_0711 - phosphatidylglycerophosphatase A-like protein, at 705,928 to 706,446 _0711 Dsui_0712: Dsui_0712 - thiamine-monophosphate kinase, at 706,424 to 707,395 _0712 Dsui_0713: Dsui_0713 - transcription antitermination factor NusB, at 707,505 to 707,987 _0713 Dsui_0714: Dsui_0714 - 6,7-dimethyl-8-ribityllumazine synthase, at 708,048 to 708,521 _0714 Position (kb) 706 707 708Strain fitness (log2 ratio) -1 0 1at 705.535 kb on - strand, within Dsui_0710at 705.541 kb on - strand, within Dsui_0710at 705.654 kb on + strand, within Dsui_0710at 705.715 kb on - strand, within Dsui_0710at 705.786 kb on - strand, within Dsui_0710at 705.897 kb on + strandat 705.898 kb on + strandat 707.448 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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705,535 - Dsui_0710 0.23 -0.6
705,541 - Dsui_0710 0.24 +0.7
705,654 + Dsui_0710 0.46 -1.7
705,715 - Dsui_0710 0.58 -0.4
705,786 - Dsui_0710 0.72 +0.6
705,897 + -0.4
705,898 + +0.5
707,448 + -0.3

Or see this region's nucleotide sequence