Strain Fitness in Dechlorosoma suillum PS around Dsui_0711

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0709 and Dsui_0710 are separated by 54 nucleotidesDsui_0710 and Dsui_0711 overlap by 4 nucleotidesDsui_0711 and Dsui_0712 overlap by 23 nucleotides Dsui_0709: Dsui_0709 - bacterioferritin, at 704,882 to 705,361 _0709 Dsui_0710: Dsui_0710 - competence/damage-inducible protein CinA-like protein, at 705,416 to 705,931 _0710 Dsui_0711: Dsui_0711 - phosphatidylglycerophosphatase A-like protein, at 705,928 to 706,446 _0711 Dsui_0712: Dsui_0712 - thiamine-monophosphate kinase, at 706,424 to 707,395 _0712 Position (kb) 705 706 707Strain fitness (log2 ratio) -1 0 1at 705.026 kb on - strand, within Dsui_0709at 705.078 kb on - strand, within Dsui_0709at 705.162 kb on + strand, within Dsui_0709at 705.175 kb on + strand, within Dsui_0709at 705.180 kb on + strand, within Dsui_0709at 705.324 kb on + strandat 705.334 kb on + strandat 705.414 kb on + strandat 705.535 kb on - strand, within Dsui_0710at 705.541 kb on - strand, within Dsui_0710at 705.654 kb on + strand, within Dsui_0710at 705.715 kb on - strand, within Dsui_0710at 705.786 kb on - strand, within Dsui_0710at 705.897 kb on + strandat 705.898 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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705,026 - Dsui_0709 0.30 +0.5
705,078 - Dsui_0709 0.41 -0.1
705,162 + Dsui_0709 0.58 +0.1
705,175 + Dsui_0709 0.61 +1.3
705,180 + Dsui_0709 0.62 +0.0
705,324 + +0.2
705,334 + +0.6
705,414 + +0.5
705,535 - Dsui_0710 0.23 -0.6
705,541 - Dsui_0710 0.24 +0.7
705,654 + Dsui_0710 0.46 -1.7
705,715 - Dsui_0710 0.58 -0.4
705,786 - Dsui_0710 0.72 +0.6
705,897 + -0.4
705,898 + +0.5

Or see this region's nucleotide sequence