Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0479 and Dsui_0480 are separated by 94 nucleotides Dsui_0480 and Dsui_0481 are separated by 26 nucleotides Dsui_0481 and Dsui_0482 are separated by 12 nucleotides Dsui_0482 and Dsui_0483 overlap by 4 nucleotides
Dsui_0479: Dsui_0479 - tol-pal system beta propeller repeat protein TolB, at 483,813 to 485,096
_0479
Dsui_0480: Dsui_0480 - periplasmic protein TonB, links inner and outer membranes, at 485,191 to 485,991
_0480
Dsui_0481: Dsui_0481 - biopolymer transport protein, at 486,018 to 486,416
_0481
Dsui_0482: Dsui_0482 - TolQ protein, at 486,429 to 487,106
_0482
Dsui_0483: Dsui_0483 - tol-pal system-associated acyl-CoA thioesterase, at 487,103 to 487,528
_0483
Position (kb) 486
487 Strain fitness (log2 ratio) -1
0
1 at 485.098 kb on + strand at 485.102 kb on - strand at 485.952 kb on - strand at 486.426 kb on - strand at 486.426 kb on - strand at 487.176 kb on + strand, within Dsui_0483 at 487.199 kb on - strand, within Dsui_0483 at 487.250 kb on - strand, within Dsui_0483 at 487.284 kb on + strand, within Dsui_0483 at 487.294 kb on - strand, within Dsui_0483
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 485,098 + +1.1 485,102 - +0.3 485,952 - -0.5 486,426 - +0.1 486,426 - -1.1 487,176 + Dsui_0483 0.17 -0.2 487,199 - Dsui_0483 0.23 -0.5 487,250 - Dsui_0483 0.35 -0.9 487,284 + Dsui_0483 0.42 +0.1 487,294 - Dsui_0483 0.45 +0.1
Or see this region's nucleotide sequence