Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0409 and Dsui_0410 are separated by 26 nucleotides Dsui_0410 and Dsui_0411 are separated by 369 nucleotides
Dsui_0409: Dsui_0409 - RND family efflux transporter, MFP subunit, at 409,449 to 410,603
_0409
Dsui_0410: Dsui_0410 - transcriptional regulator, at 410,630 to 411,265
_0410
Dsui_0411: Dsui_0411 - ABC-type dipeptide transport system, periplasmic component, at 411,635 to 413,245
_0411
Position (kb) 410
411
412 Strain fitness (log2 ratio) -1
0
1
2 at 409.631 kb on + strand, within Dsui_0409 at 409.669 kb on + strand, within Dsui_0409 at 409.697 kb on - strand, within Dsui_0409 at 409.747 kb on - strand, within Dsui_0409 at 409.747 kb on - strand, within Dsui_0409 at 409.852 kb on - strand, within Dsui_0409 at 409.908 kb on - strand, within Dsui_0409 at 409.980 kb on - strand, within Dsui_0409 at 410.171 kb on - strand, within Dsui_0409 at 410.252 kb on + strand, within Dsui_0409 at 410.499 kb on + strand at 410.558 kb on - strand at 410.806 kb on + strand at 410.961 kb on - strand, within Dsui_0410 at 411.260 kb on + strand at 411.336 kb on - strand at 411.406 kb on - strand at 411.472 kb on - strand at 411.472 kb on - strand at 411.495 kb on + strand at 411.550 kb on - strand at 411.656 kb on - strand at 411.680 kb on + strand at 411.750 kb on + strand at 411.763 kb on - strand at 411.823 kb on - strand at 411.937 kb on + strand, within Dsui_0411 at 412.006 kb on + strand, within Dsui_0411 at 412.037 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 409,631 + Dsui_0409 0.16 +0.4 409,669 + Dsui_0409 0.19 -1.4 409,697 - Dsui_0409 0.21 +1.0 409,747 - Dsui_0409 0.26 +2.0 409,747 - Dsui_0409 0.26 -0.6 409,852 - Dsui_0409 0.35 -0.0 409,908 - Dsui_0409 0.40 +0.4 409,980 - Dsui_0409 0.46 -0.2 410,171 - Dsui_0409 0.63 +0.5 410,252 + Dsui_0409 0.70 +0.1 410,499 + +0.1 410,558 - -0.0 410,806 + -1.4 410,961 - Dsui_0410 0.52 +0.4 411,260 + +1.1 411,336 - +1.5 411,406 - +0.1 411,472 - -0.0 411,472 - +0.4 411,495 + -0.0 411,550 - +0.5 411,656 - -0.4 411,680 + -0.7 411,750 + -0.0 411,763 - +0.4 411,823 - +2.0 411,937 + Dsui_0411 0.19 +0.2 412,006 + Dsui_0411 0.23 +0.7 412,037 + -0.0
Or see this region's nucleotide sequence