Strain Fitness in Dechlorosoma suillum PS around Dsui_0403

Experiment: rich media with sodium chlorite 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0401 and Dsui_0402 are separated by 19 nucleotidesDsui_0402 and Dsui_0403 are separated by 82 nucleotidesDsui_0403 and Dsui_0404 are separated by 6 nucleotides Dsui_0401: Dsui_0401 - nucleoside-diphosphate-sugar epimerase, at 399,707 to 400,711 _0401 Dsui_0402: Dsui_0402 - glycosyl transferase, at 400,731 to 401,510 _0402 Dsui_0403: Dsui_0403 - lipopolysaccharide heptosyltransferase I, at 401,593 to 402,564 _0403 Dsui_0404: Dsui_0404 - 3-deoxy-D-manno-octulosonic-acid transferase, at 402,571 to 403,854 _0404 Position (kb) 401 402 403Strain fitness (log2 ratio) -1 0 1at 400.729 kb on + strandat 401.518 kb on + strandat 401.525 kb on - strandat 401.526 kb on - strandat 401.568 kb on + strandat 402.585 kb on + strandat 402.585 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM
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400,729 + +0.6
401,518 + -1.0
401,525 - -0.5
401,526 - -0.4
401,568 + +0.5
402,585 + -0.5
402,585 + +0.3

Or see this region's nucleotide sequence