Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0228 and Dsui_0229 are separated by 23 nucleotides Dsui_0229 and Dsui_0230 overlap by 14 nucleotides Dsui_0230 and Dsui_0231 are separated by 19 nucleotides
Dsui_0228: Dsui_0228 - metalloendopeptidase-like membrane protein, at 227,303 to 228,247
_0228
Dsui_0229: Dsui_0229 - Protein of unknown function (DUF721), at 228,271 to 228,711
_0229
Dsui_0230: Dsui_0230 - hypothetical protein, at 228,698 to 228,886
_0230
Dsui_0231: Dsui_0231 - UDP-3-0-acyl N-acetylglucosamine deacetylase, at 228,906 to 229,829
_0231
Position (kb) 228
229 Strain fitness (log2 ratio) -1
0
1 at 227.709 kb on - strand, within Dsui_0228 at 227.864 kb on - strand, within Dsui_0228 at 227.908 kb on + strand, within Dsui_0228 at 227.943 kb on + strand, within Dsui_0228 at 228.046 kb on - strand, within Dsui_0228 at 228.048 kb on - strand, within Dsui_0228 at 228.062 kb on + strand, within Dsui_0228 at 228.067 kb on + strand, within Dsui_0228 at 228.078 kb on + strand, within Dsui_0228 at 228.078 kb on + strand, within Dsui_0228 at 228.091 kb on - strand, within Dsui_0228 at 228.106 kb on + strand, within Dsui_0228 at 228.154 kb on + strand at 228.190 kb on + strand at 228.192 kb on - strand at 228.204 kb on + strand at 228.212 kb on - strand at 228.257 kb on + strand at 228.257 kb on + strand at 228.257 kb on + strand at 228.281 kb on - strand at 228.712 kb on + strand at 228.771 kb on - strand, within Dsui_0230 at 229.871 kb on + strand at 229.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 227,709 - Dsui_0228 0.43 -0.1 227,864 - Dsui_0228 0.59 +0.2 227,908 + Dsui_0228 0.64 -0.2 227,943 + Dsui_0228 0.68 -0.3 228,046 - Dsui_0228 0.79 -0.1 228,048 - Dsui_0228 0.79 -0.2 228,062 + Dsui_0228 0.80 +0.4 228,067 + Dsui_0228 0.81 +0.7 228,078 + Dsui_0228 0.82 -0.1 228,078 + Dsui_0228 0.82 +0.4 228,091 - Dsui_0228 0.83 -0.3 228,106 + Dsui_0228 0.85 -1.2 228,154 + -0.4 228,190 + +0.8 228,192 - -0.8 228,204 + -0.1 228,212 - -0.1 228,257 + -0.3 228,257 + -0.1 228,257 + -0.3 228,281 - -0.1 228,712 + +0.5 228,771 - Dsui_0230 0.39 -0.5 229,871 + -0.1 229,871 + +0.1
Or see this region's nucleotide sequence