Experiment: rich media with sodium chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0120 and Dsui_0121 are separated by 61 nucleotides Dsui_0121 and Dsui_0122 are separated by 100 nucleotides Dsui_0122 and Dsui_0123 are separated by 3 nucleotides
Dsui_0120: Dsui_0120 - peptide chain release factor 1, at 117,963 to 119,060
_0120
Dsui_0121: Dsui_0121 - glutamyl-tRNA reductase, at 119,122 to 120,393
_0121
Dsui_0122: Dsui_0122 - D-tyrosyl-tRNA(Tyr) deacylase, at 120,494 to 120,964
_0122
Dsui_0123: Dsui_0123 - hypothetical protein, at 120,968 to 121,624
_0123
Position (kb)
119
120
121 Strain fitness (log2 ratio)
-1
0
1
2 at 120.429 kb on - strand at 120.447 kb on - strand at 120.517 kb on + strand at 120.714 kb on - strand, within Dsui_0122 at 120.745 kb on + strand at 120.753 kb on - strand, within Dsui_0122 at 120.889 kb on - strand, within Dsui_0122 at 120.907 kb on + strand at 120.974 kb on - strand at 120.974 kb on - strand at 121.029 kb on - strand at 121.036 kb on - strand, within Dsui_0123 at 121.052 kb on + strand, within Dsui_0123 at 121.138 kb on - strand, within Dsui_0123 at 121.149 kb on - strand, within Dsui_0123 at 121.219 kb on + strand, within Dsui_0123 at 121.219 kb on + strand at 121.219 kb on + strand at 121.250 kb on + strand, within Dsui_0123 at 121.265 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with sodium chlorite 0.16 mM remove 120,429 - -1.5 120,447 - +0.6 120,517 + -1.0 120,714 - Dsui_0122 0.47 +0.0 120,745 + +0.7 120,753 - Dsui_0122 0.55 -0.6 120,889 - Dsui_0122 0.84 +0.2 120,907 + -0.3 120,974 - +1.3 120,974 - +0.2 121,029 - +0.0 121,036 - Dsui_0123 0.10 +0.3 121,052 + Dsui_0123 0.13 -0.9 121,138 - Dsui_0123 0.26 +0.1 121,149 - Dsui_0123 0.28 +0.4 121,219 + Dsui_0123 0.38 -1.3 121,219 + +2.1 121,219 + +2.1 121,250 + Dsui_0123 0.43 +0.5 121,265 + +1.1
Or see this region's nucleotide sequence