Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4111 and Shewana3_4112 are separated by 108 nucleotides Shewana3_4112 and Shewana3_4113 are separated by 421 nucleotides Shewana3_4113 and Shewana3_4114 are separated by 82 nucleotides Shewana3_4114 and Shewana3_4115 are separated by 68 nucleotides
Shewana3_4111: Shewana3_4111 - cytochrome c, class I (RefSeq), at 4,935,890 to 4,936,513
_4111
Shewana3_4112: Shewana3_4112 - hypothetical protein (RefSeq), at 4,936,622 to 4,936,915
_4112
Shewana3_4113: Shewana3_4113 - hypothetical protein (RefSeq), at 4,937,337 to 4,937,975
_4113
Shewana3_4114: Shewana3_4114 - hypothetical protein (RefSeq), at 4,938,058 to 4,938,612
_4114
Shewana3_4115: Shewana3_4115 - hypothetical protein (RefSeq), at 4,938,681 to 4,939,148
_4115
Position (kb) 4937
4938 Strain fitness (log2 ratio) -1
0
1 at 4936.568 kb on + strand at 4936.637 kb on - strand at 4937.038 kb on + strand at 4937.256 kb on - strand at 4937.299 kb on - strand at 4937.352 kb on - strand at 4937.439 kb on - strand, within Shewana3_4113 at 4937.644 kb on + strand, within Shewana3_4113 at 4937.652 kb on - strand, within Shewana3_4113 at 4937.744 kb on + strand, within Shewana3_4113 at 4937.901 kb on - strand, within Shewana3_4113 at 4938.010 kb on - strand at 4938.237 kb on + strand, within Shewana3_4114 at 4938.699 kb on - strand at 4938.760 kb on - strand, within Shewana3_4115
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,936,568 + +0.5 4,936,637 - +0.2 4,937,038 + +0.5 4,937,256 - -0.9 4,937,299 - +0.4 4,937,352 - -0.1 4,937,439 - Shewana3_4113 0.16 +0.4 4,937,644 + Shewana3_4113 0.48 +0.5 4,937,652 - Shewana3_4113 0.49 -0.1 4,937,744 + Shewana3_4113 0.64 +0.6 4,937,901 - Shewana3_4113 0.88 +0.4 4,938,010 - +0.8 4,938,237 + Shewana3_4114 0.32 -1.6 4,938,699 - +1.1 4,938,760 - Shewana3_4115 0.17 -1.1
Or see this region's nucleotide sequence