Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4061 and Shewana3_4062 are separated by 49 nucleotides Shewana3_4062 and Shewana3_4063 are separated by 106 nucleotides Shewana3_4063 and Shewana3_4064 are separated by 144 nucleotides
Shewana3_4061: Shewana3_4061 - hypothetical protein (RefSeq), at 4,880,912 to 4,881,862
_4061
Shewana3_4062: Shewana3_4062 - hypothetical protein (RefSeq), at 4,881,912 to 4,882,064
_4062
Shewana3_4063: Shewana3_4063 - LuxR family transcriptional regulator (RefSeq), at 4,882,171 to 4,882,716
_4063
Shewana3_4064: Shewana3_4064 - hypothetical protein (RefSeq), at 4,882,861 to 4,884,063
_4064
Position (kb)
4882
4883 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4881.234 kb on + strand, within Shewana3_4061 at 4881.370 kb on + strand, within Shewana3_4061 at 4881.466 kb on - strand, within Shewana3_4061 at 4881.536 kb on - strand, within Shewana3_4061 at 4881.553 kb on + strand, within Shewana3_4061 at 4881.556 kb on - strand, within Shewana3_4061 at 4881.607 kb on + strand, within Shewana3_4061 at 4881.852 kb on + strand at 4881.909 kb on + strand at 4881.917 kb on - strand at 4881.917 kb on - strand at 4881.917 kb on - strand at 4881.917 kb on - strand at 4881.987 kb on + strand, within Shewana3_4062 at 4882.172 kb on - strand at 4882.533 kb on - strand, within Shewana3_4063 at 4882.605 kb on - strand, within Shewana3_4063 at 4882.681 kb on - strand at 4882.681 kb on - strand at 4882.812 kb on - strand at 4882.968 kb on - strand at 4883.068 kb on + strand, within Shewana3_4064 at 4883.068 kb on - strand, within Shewana3_4064 at 4883.078 kb on - strand, within Shewana3_4064 at 4883.140 kb on + strand, within Shewana3_4064 at 4883.369 kb on - strand, within Shewana3_4064 at 4883.369 kb on - strand, within Shewana3_4064 at 4883.401 kb on + strand, within Shewana3_4064 at 4883.401 kb on + strand, within Shewana3_4064 at 4883.409 kb on - strand, within Shewana3_4064 at 4883.409 kb on - strand, within Shewana3_4064 at 4883.409 kb on - strand, within Shewana3_4064 at 4883.409 kb on - strand, within Shewana3_4064 at 4883.409 kb on - strand, within Shewana3_4064 at 4883.442 kb on - strand, within Shewana3_4064 at 4883.449 kb on - strand, within Shewana3_4064 at 4883.575 kb on + strand, within Shewana3_4064 at 4883.704 kb on + strand, within Shewana3_4064 at 4883.704 kb on + strand, within Shewana3_4064
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,881,234 + Shewana3_4061 0.34 -0.8 4,881,370 + Shewana3_4061 0.48 +0.6 4,881,466 - Shewana3_4061 0.58 +0.4 4,881,536 - Shewana3_4061 0.66 -1.1 4,881,553 + Shewana3_4061 0.67 +0.5 4,881,556 - Shewana3_4061 0.68 +0.3 4,881,607 + Shewana3_4061 0.73 -0.7 4,881,852 + +0.3 4,881,909 + +0.0 4,881,917 - -0.5 4,881,917 - +0.5 4,881,917 - -0.6 4,881,917 - +0.9 4,881,987 + Shewana3_4062 0.49 -0.5 4,882,172 - -0.5 4,882,533 - Shewana3_4063 0.66 +0.2 4,882,605 - Shewana3_4063 0.79 +0.5 4,882,681 - +0.4 4,882,681 - +0.6 4,882,812 - +0.3 4,882,968 - -0.7 4,883,068 + Shewana3_4064 0.17 +0.5 4,883,068 - Shewana3_4064 0.17 +0.2 4,883,078 - Shewana3_4064 0.18 -0.9 4,883,140 + Shewana3_4064 0.23 -0.5 4,883,369 - Shewana3_4064 0.42 -3.3 4,883,369 - Shewana3_4064 0.42 +0.2 4,883,401 + Shewana3_4064 0.45 -0.8 4,883,401 + Shewana3_4064 0.45 -0.0 4,883,409 - Shewana3_4064 0.46 +0.6 4,883,409 - Shewana3_4064 0.46 +0.4 4,883,409 - Shewana3_4064 0.46 -1.3 4,883,409 - Shewana3_4064 0.46 -0.1 4,883,409 - Shewana3_4064 0.46 -0.9 4,883,442 - Shewana3_4064 0.48 +0.8 4,883,449 - Shewana3_4064 0.49 -1.2 4,883,575 + Shewana3_4064 0.59 -0.9 4,883,704 + Shewana3_4064 0.70 +0.7 4,883,704 + Shewana3_4064 0.70 -0.9
Or see this region's nucleotide sequence