Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4063

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4061 and Shewana3_4062 are separated by 49 nucleotidesShewana3_4062 and Shewana3_4063 are separated by 106 nucleotidesShewana3_4063 and Shewana3_4064 are separated by 144 nucleotides Shewana3_4061: Shewana3_4061 - hypothetical protein (RefSeq), at 4,880,912 to 4,881,862 _4061 Shewana3_4062: Shewana3_4062 - hypothetical protein (RefSeq), at 4,881,912 to 4,882,064 _4062 Shewana3_4063: Shewana3_4063 - LuxR family transcriptional regulator (RefSeq), at 4,882,171 to 4,882,716 _4063 Shewana3_4064: Shewana3_4064 - hypothetical protein (RefSeq), at 4,882,861 to 4,884,063 _4064 Position (kb) 4882 4883Strain fitness (log2 ratio) -3 -2 -1 0 1at 4881.234 kb on + strand, within Shewana3_4061at 4881.370 kb on + strand, within Shewana3_4061at 4881.466 kb on - strand, within Shewana3_4061at 4881.536 kb on - strand, within Shewana3_4061at 4881.553 kb on + strand, within Shewana3_4061at 4881.556 kb on - strand, within Shewana3_4061at 4881.607 kb on + strand, within Shewana3_4061at 4881.852 kb on + strandat 4881.909 kb on + strandat 4881.917 kb on - strandat 4881.917 kb on - strandat 4881.917 kb on - strandat 4881.917 kb on - strandat 4881.987 kb on + strand, within Shewana3_4062at 4882.172 kb on - strandat 4882.533 kb on - strand, within Shewana3_4063at 4882.605 kb on - strand, within Shewana3_4063at 4882.681 kb on - strandat 4882.681 kb on - strandat 4882.812 kb on - strandat 4882.968 kb on - strandat 4883.068 kb on + strand, within Shewana3_4064at 4883.068 kb on - strand, within Shewana3_4064at 4883.078 kb on - strand, within Shewana3_4064at 4883.140 kb on + strand, within Shewana3_4064at 4883.369 kb on - strand, within Shewana3_4064at 4883.369 kb on - strand, within Shewana3_4064at 4883.401 kb on + strand, within Shewana3_4064at 4883.401 kb on + strand, within Shewana3_4064at 4883.409 kb on - strand, within Shewana3_4064at 4883.409 kb on - strand, within Shewana3_4064at 4883.409 kb on - strand, within Shewana3_4064at 4883.409 kb on - strand, within Shewana3_4064at 4883.409 kb on - strand, within Shewana3_4064at 4883.442 kb on - strand, within Shewana3_4064at 4883.449 kb on - strand, within Shewana3_4064at 4883.575 kb on + strand, within Shewana3_4064at 4883.704 kb on + strand, within Shewana3_4064at 4883.704 kb on + strand, within Shewana3_4064

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,881,234 + Shewana3_4061 0.34 -0.8
4,881,370 + Shewana3_4061 0.48 +0.6
4,881,466 - Shewana3_4061 0.58 +0.4
4,881,536 - Shewana3_4061 0.66 -1.1
4,881,553 + Shewana3_4061 0.67 +0.5
4,881,556 - Shewana3_4061 0.68 +0.3
4,881,607 + Shewana3_4061 0.73 -0.7
4,881,852 + +0.3
4,881,909 + +0.0
4,881,917 - -0.5
4,881,917 - +0.5
4,881,917 - -0.6
4,881,917 - +0.9
4,881,987 + Shewana3_4062 0.49 -0.5
4,882,172 - -0.5
4,882,533 - Shewana3_4063 0.66 +0.2
4,882,605 - Shewana3_4063 0.79 +0.5
4,882,681 - +0.4
4,882,681 - +0.6
4,882,812 - +0.3
4,882,968 - -0.7
4,883,068 + Shewana3_4064 0.17 +0.5
4,883,068 - Shewana3_4064 0.17 +0.2
4,883,078 - Shewana3_4064 0.18 -0.9
4,883,140 + Shewana3_4064 0.23 -0.5
4,883,369 - Shewana3_4064 0.42 -3.3
4,883,369 - Shewana3_4064 0.42 +0.2
4,883,401 + Shewana3_4064 0.45 -0.8
4,883,401 + Shewana3_4064 0.45 -0.0
4,883,409 - Shewana3_4064 0.46 +0.6
4,883,409 - Shewana3_4064 0.46 +0.4
4,883,409 - Shewana3_4064 0.46 -1.3
4,883,409 - Shewana3_4064 0.46 -0.1
4,883,409 - Shewana3_4064 0.46 -0.9
4,883,442 - Shewana3_4064 0.48 +0.8
4,883,449 - Shewana3_4064 0.49 -1.2
4,883,575 + Shewana3_4064 0.59 -0.9
4,883,704 + Shewana3_4064 0.70 +0.7
4,883,704 + Shewana3_4064 0.70 -0.9

Or see this region's nucleotide sequence