Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4035

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4032 and Shewana3_4033 are separated by 1 nucleotidesShewana3_4033 and Shewana3_4034 overlap by 1 nucleotidesShewana3_4034 and Shewana3_4035 are separated by 13 nucleotidesShewana3_4035 and Shewana3_4036 are separated by 182 nucleotides Shewana3_4032: Shewana3_4032 - cytochrome c oxidase, subunit I (RefSeq), at 4,845,079 to 4,847,058 _4032 Shewana3_4033: Shewana3_4033 - cytochrome c oxidase, subunit III (RefSeq), at 4,847,060 to 4,847,680 _4033 Shewana3_4034: Shewana3_4034 - cytochrome C oxidase subunit IV (RefSeq), at 4,847,680 to 4,848,021 _4034 Shewana3_4035: Shewana3_4035 - protoheme IX farnesyltransferase (RefSeq), at 4,848,035 to 4,848,967 _4035 Shewana3_4036: Shewana3_4036 - amidohydrolase 3 (RefSeq), at 4,849,150 to 4,850,955 _4036 Position (kb) 4848 4849Strain fitness (log2 ratio) -1 0 1 2at 4847.057 kb on + strandat 4847.224 kb on - strand, within Shewana3_4033at 4847.309 kb on + strand, within Shewana3_4033at 4847.372 kb on + strand, within Shewana3_4033at 4847.380 kb on - strand, within Shewana3_4033at 4847.380 kb on - strand, within Shewana3_4033at 4847.380 kb on - strand, within Shewana3_4033at 4847.522 kb on + strand, within Shewana3_4033at 4847.591 kb on + strand, within Shewana3_4033at 4847.591 kb on + strand, within Shewana3_4033at 4847.599 kb on - strand, within Shewana3_4033at 4847.662 kb on - strandat 4847.759 kb on + strand, within Shewana3_4034at 4847.906 kb on + strand, within Shewana3_4034at 4848.224 kb on + strand, within Shewana3_4035at 4848.348 kb on + strand, within Shewana3_4035at 4848.348 kb on + strand, within Shewana3_4035at 4848.348 kb on + strand, within Shewana3_4035at 4848.727 kb on + strand, within Shewana3_4035at 4848.776 kb on + strand, within Shewana3_4035at 4848.812 kb on - strand, within Shewana3_4035at 4848.825 kb on - strand, within Shewana3_4035at 4848.832 kb on - strand, within Shewana3_4035at 4849.023 kb on + strandat 4849.176 kb on - strandat 4849.444 kb on - strand, within Shewana3_4036at 4849.586 kb on + strand, within Shewana3_4036at 4849.652 kb on - strand, within Shewana3_4036at 4849.657 kb on - strand, within Shewana3_4036at 4849.657 kb on - strand, within Shewana3_4036at 4849.903 kb on + strand, within Shewana3_4036at 4849.905 kb on + strand, within Shewana3_4036at 4849.964 kb on - strand, within Shewana3_4036at 4849.964 kb on - strand, within Shewana3_4036

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,847,057 + -0.6
4,847,224 - Shewana3_4033 0.26 -0.1
4,847,309 + Shewana3_4033 0.40 -0.9
4,847,372 + Shewana3_4033 0.50 -0.2
4,847,380 - Shewana3_4033 0.52 -0.6
4,847,380 - Shewana3_4033 0.52 -1.1
4,847,380 - Shewana3_4033 0.52 +0.3
4,847,522 + Shewana3_4033 0.74 +0.2
4,847,591 + Shewana3_4033 0.86 +1.9
4,847,591 + Shewana3_4033 0.86 -1.1
4,847,599 - Shewana3_4033 0.87 -0.9
4,847,662 - -0.4
4,847,759 + Shewana3_4034 0.23 +1.8
4,847,906 + Shewana3_4034 0.66 +0.1
4,848,224 + Shewana3_4035 0.20 +0.2
4,848,348 + Shewana3_4035 0.34 -0.9
4,848,348 + Shewana3_4035 0.34 -0.8
4,848,348 + Shewana3_4035 0.34 +0.3
4,848,727 + Shewana3_4035 0.74 -0.1
4,848,776 + Shewana3_4035 0.79 +0.5
4,848,812 - Shewana3_4035 0.83 +0.6
4,848,825 - Shewana3_4035 0.85 -0.0
4,848,832 - Shewana3_4035 0.85 -0.6
4,849,023 + -0.9
4,849,176 - -0.1
4,849,444 - Shewana3_4036 0.16 -0.1
4,849,586 + Shewana3_4036 0.24 -0.7
4,849,652 - Shewana3_4036 0.28 -0.8
4,849,657 - Shewana3_4036 0.28 +0.4
4,849,657 - Shewana3_4036 0.28 +0.3
4,849,903 + Shewana3_4036 0.42 -0.5
4,849,905 + Shewana3_4036 0.42 +0.0
4,849,964 - Shewana3_4036 0.45 +0.7
4,849,964 - Shewana3_4036 0.45 +0.5

Or see this region's nucleotide sequence