Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3884

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3882 and Shewana3_3883 overlap by 4 nucleotidesShewana3_3883 and Shewana3_3884 are separated by 18 nucleotidesShewana3_3884 and Shewana3_3885 are separated by 120 nucleotides Shewana3_3882: Shewana3_3882 - phosphoheptose isomerase (RefSeq), at 4,662,609 to 4,663,202 _3882 Shewana3_3883: Shewana3_3883 - transport-associated (RefSeq), at 4,663,199 to 4,663,765 _3883 Shewana3_3884: Shewana3_3884 - hypothetical protein (RefSeq), at 4,663,784 to 4,664,704 _3884 Shewana3_3885: Shewana3_3885 - LysR family transcriptional regulator (RefSeq), at 4,664,825 to 4,665,697 _3885 Position (kb) 4663 4664 4665Strain fitness (log2 ratio) -3 -2 -1 0 1at 4662.845 kb on + strand, within Shewana3_3882at 4663.002 kb on + strand, within Shewana3_3882at 4663.037 kb on - strand, within Shewana3_3882at 4663.099 kb on + strand, within Shewana3_3882at 4663.201 kb on + strandat 4663.226 kb on - strandat 4663.424 kb on + strand, within Shewana3_3883at 4663.436 kb on + strand, within Shewana3_3883at 4663.583 kb on + strand, within Shewana3_3883at 4663.612 kb on + strand, within Shewana3_3883at 4663.695 kb on - strand, within Shewana3_3883at 4663.722 kb on - strandat 4663.727 kb on - strandat 4664.109 kb on - strand, within Shewana3_3884at 4664.149 kb on - strand, within Shewana3_3884at 4664.184 kb on - strand, within Shewana3_3884at 4664.185 kb on - strand, within Shewana3_3884at 4664.277 kb on - strand, within Shewana3_3884at 4664.349 kb on + strand, within Shewana3_3884at 4664.357 kb on - strand, within Shewana3_3884at 4664.493 kb on + strand, within Shewana3_3884at 4664.852 kb on + strandat 4664.860 kb on - strandat 4665.089 kb on + strand, within Shewana3_3885at 4665.261 kb on + strand, within Shewana3_3885at 4665.307 kb on + strand, within Shewana3_3885at 4665.419 kb on - strand, within Shewana3_3885at 4665.521 kb on + strand, within Shewana3_3885at 4665.523 kb on - strand, within Shewana3_3885at 4665.523 kb on - strand, within Shewana3_3885

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,662,845 + Shewana3_3882 0.40 -0.4
4,663,002 + Shewana3_3882 0.66 -2.9
4,663,037 - Shewana3_3882 0.72 -1.1
4,663,099 + Shewana3_3882 0.82 -1.6
4,663,201 + +0.3
4,663,226 - +0.8
4,663,424 + Shewana3_3883 0.40 +0.1
4,663,436 + Shewana3_3883 0.42 +0.7
4,663,583 + Shewana3_3883 0.68 +0.6
4,663,612 + Shewana3_3883 0.73 +0.2
4,663,695 - Shewana3_3883 0.87 +0.6
4,663,722 - +1.0
4,663,727 - +0.9
4,664,109 - Shewana3_3884 0.35 +0.2
4,664,149 - Shewana3_3884 0.40 -0.6
4,664,184 - Shewana3_3884 0.43 -0.3
4,664,185 - Shewana3_3884 0.44 +0.1
4,664,277 - Shewana3_3884 0.54 +0.6
4,664,349 + Shewana3_3884 0.61 -1.2
4,664,357 - Shewana3_3884 0.62 +0.3
4,664,493 + Shewana3_3884 0.77 -1.2
4,664,852 + -0.6
4,664,860 - +0.2
4,665,089 + Shewana3_3885 0.30 +0.1
4,665,261 + Shewana3_3885 0.50 -1.0
4,665,307 + Shewana3_3885 0.55 -0.5
4,665,419 - Shewana3_3885 0.68 +0.7
4,665,521 + Shewana3_3885 0.80 +0.6
4,665,523 - Shewana3_3885 0.80 -1.9
4,665,523 - Shewana3_3885 0.80 -0.2

Or see this region's nucleotide sequence